ResBoxes

Residue Boxes - A single letter code is shown, representing the amino acids of the protein sequence which structure is inspected. The amino acid Boxes are color coded according to either STING_Paint code (1) or according to William Taylor (2) code.

Placing the cursor above this element: pop-up area will show the position (sequence number and amino acid three letter code) for selected amino acid.
Left mouse click: no action
Right mouse click: on any of the "ResBox" will generate following menu and actions:

Figure below is showing specific position for the row with the "ResBox" data in JPD presentation.

A) "Scorpion" will call Scorpion component of BLUE STAR STING (see HELP on Scorpion):

B) STING it - will induce CPK rendering for selected amino acid. Rendering and color can be chosen among number of options in the icons menu of JPD:

C) "Java Ca-Ca Distance Plot" will call equally named component of BLUE STAR STING (see HELP on Java Ca-Ca Distance Plot ):

D) "Java Cb-Cb Distance Plot" will call equally named component of BLUE STAR STING (see HELP on Java Cb-Cb Distance Plot ):

E) "Show 5_AA-Selected_AA-5_AA" will show a portion of the JPD area with central amino acid and 5 amino acids from each side:



For residues where the experimental technique (x-ray crystallography) and its electron density does not permit amino acid identification, these positions are presented as gaps or undetermined (see 1cho.pdb):