Header list of 3leu.pdb file
Complete list - 16 20 Bytes
HEADER ANTIBACTERIAL PEPTIDE 20-MAY-97 3LEU
TITLE HIGH RESOLUTION 1H NMR STUDY OF LEUCOCIN A IN DODECYLPHOSPHOCHOLINE
TITLE 2 MICELLES, 19 STRUCTURES (1:40 RATIO OF LEUCOCIN A:DPC) (0.1% TFA)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LEUCOCIN A;
COMPND 3 CHAIN: A
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: LEUCONOSTOC GELIDUM;
SOURCE 3 ORGANISM_TAXID: 1244;
SOURCE 4 STRAIN: UAL 187
KEYWDS ANTIBACTERIAL PEPTIDE, BACTERIOCIN
EXPDTA SOLUTION NMR
NUMMDL 19
AUTHOR N.L.F.GALLAGHER,M.SAILER,W.P.NIEMCZURA,T.T.NAKASHIMA,M.E.STILES,
AUTHOR 2 J.C.VEDERAS
REVDAT 3 16-MAR-22 3LEU 1 REMARK
REVDAT 2 24-FEB-09 3LEU 1 VERSN
REVDAT 1 26-NOV-97 3LEU 0
JRNL AUTH N.L.FREGEAU GALLAGHER,M.SAILER,W.P.NIEMCZURA,T.T.NAKASHIMA,
JRNL AUTH 2 M.E.STILES,J.C.VEDERAS
JRNL TITL THREE-DIMENSIONAL STRUCTURE OF LEUCOCIN A IN
JRNL TITL 2 TRIFLUOROETHANOL AND DODECYLPHOSPHOCHOLINE MICELLES: SPATIAL
JRNL TITL 3 LOCATION OF RESIDUES CRITICAL FOR BIOLOGICAL ACTIVITY IN
JRNL TITL 4 TYPE IIA BACTERIOCINS FROM LACTIC ACID BACTERIA.
JRNL REF BIOCHEMISTRY V. 36 15062 1997
JRNL REFN ISSN 0006-2960
JRNL PMID 9398233
JRNL DOI 10.1021/BI971263H
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH M.J.VAN BELKUM,M.E.STILES
REMARK 1 TITL MOLECULAR CHARACTERIZATION OF GENES INVOLVED IN THE
REMARK 1 TITL 2 PRODUCTION OF THE BACTERIOCIN LEUCOCIN A FROM LEUCONOSTOC
REMARK 1 TITL 3 GELIDUM
REMARK 1 REF APPL.ENVIRON.MICROBIOL. V. 61 3573 1995
REMARK 1 REFN ISSN 0099-2240
REMARK 1 REFERENCE 2
REMARK 1 AUTH M.SAILER,G.L.HELMS,T.HENKEL,W.P.NIEMCZURA,M.E.STILES,
REMARK 1 AUTH 2 J.C.VEDERAS
REMARK 1 TITL 15N-AND 13C-LABELED MEDIA FROM ANABAENA SP. FOR UNIVERSAL
REMARK 1 TITL 2 ISOTOPIC LABELING OF BACTERIOCINS: NMR RESONANCE ASSIGNMENTS
REMARK 1 TITL 3 OF LEUCOCIN A FROM LEUCONOSTOC GELIDUM AND NISIN A FROM
REMARK 1 TITL 4 LACTOCOCCUS LACTIS
REMARK 1 REF BIOCHEMISTRY V. 32 310 1993
REMARK 1 REFN ISSN 0006-2960
REMARK 1 REFERENCE 3
REMARK 1 AUTH T.HENKEL,M.SAILER,G.L.HELMS,M.E.STILES,J.C.VEDERAS
REMARK 1 TITL NMR ASSIGNMENT OF LEUCOCIN A, A BACTERIOCIN FROM LEUCONOSTOC
REMARK 1 TITL 2 GELIDUM, SUPPORTED BY A STABLE ISOTOPE LABELING TECHNIQUE
REMARK 1 TITL 3 FOR PEPTIDES AND PROTEINS
REMARK 1 REF J.AM.CHEM.SOC. V. 114 1898 1992
REMARK 1 REFN ISSN 0002-7863
REMARK 1 REFERENCE 4
REMARK 1 AUTH J.W.HASTINGS,M.SAILER,K.JOHNSON,K.L.ROY,J.C.VEDERAS,
REMARK 1 AUTH 2 M.E.STILES
REMARK 1 TITL CHARACTERIZATION OF LEUCOCIN A-UAL 187 AND CLONING OF THE
REMARK 1 TITL 2 BACTERIOCIN GENE FROM LEUCONOSTOC GELIDUM
REMARK 1 REF J.BACTERIOL. V. 173 7491 1991
REMARK 1 REFN ISSN 0021-9193
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DGII
REMARK 3 AUTHORS : HAVEL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE
REMARK 3 JRNL CITATION ABOVE.
REMARK 4
REMARK 4 3LEU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000179033.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 308
REMARK 210 PH : 2.8
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQF-COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : UNITY 500
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : DGII (MSI) (MSI)
REMARK 210 METHOD USED : DISTANCE GEOMETRY/ SIMULATED
REMARK 210 ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 25
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19
REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HG23 VAL A 7 HG13 VAL A 16 0.95
REMARK 500 HB3 ASN A 17 HB2 GLU A 20 1.33
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 1 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 1 TRP A 37 C TRP A 37 O 0.151
REMARK 500 2 GLU A 20 CD GLU A 20 OE2 0.109
REMARK 500 2 TRP A 37 C TRP A 37 O 0.150
REMARK 500 3 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 3 TRP A 37 C TRP A 37 O 0.152
REMARK 500 4 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 4 TRP A 37 C TRP A 37 O 0.153
REMARK 500 5 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 5 TRP A 37 C TRP A 37 O 0.151
REMARK 500 6 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 6 TRP A 37 C TRP A 37 O 0.150
REMARK 500 7 GLU A 20 CD GLU A 20 OE2 0.109
REMARK 500 7 TRP A 37 C TRP A 37 O 0.151
REMARK 500 8 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 8 TRP A 37 C TRP A 37 O 0.151
REMARK 500 9 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 9 TRP A 37 C TRP A 37 O 0.151
REMARK 500 10 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 10 TRP A 37 C TRP A 37 O 0.151
REMARK 500 11 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 11 TRP A 37 C TRP A 37 O 0.152
REMARK 500 12 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 12 TRP A 37 C TRP A 37 O 0.151
REMARK 500 13 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 13 TRP A 37 C TRP A 37 O 0.152
REMARK 500 14 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 14 TRP A 37 C TRP A 37 O 0.151
REMARK 500 15 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 15 TRP A 37 C TRP A 37 O 0.151
REMARK 500 16 GLU A 20 CD GLU A 20 OE2 0.111
REMARK 500 16 TRP A 37 C TRP A 37 O 0.151
REMARK 500 17 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 17 TRP A 37 C TRP A 37 O 0.151
REMARK 500 18 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 18 TRP A 37 C TRP A 37 O 0.151
REMARK 500 19 GLU A 20 CD GLU A 20 OE2 0.110
REMARK 500 19 TRP A 37 C TRP A 37 O 0.151
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 2 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 3 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 4 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 5 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 6 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 7 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 8 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 9 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 10 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 11 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 12 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 13 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 14 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 15 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 16 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 17 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 18 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 19 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ASN A 5 133.14 68.01
REMARK 500 1 HIS A 8 77.74 59.02
REMARK 500 1 SER A 12 42.97 174.63
REMARK 500 1 CYS A 14 -83.94 -93.00
REMARK 500 1 VAL A 16 70.41 47.76
REMARK 500 2 TYR A 2 43.07 -92.64
REMARK 500 2 ASN A 5 34.13 -167.06
REMARK 500 2 HIS A 8 65.24 60.36
REMARK 500 2 THR A 10 44.11 -145.10
REMARK 500 2 LYS A 11 29.06 -143.36
REMARK 500 2 SER A 12 -38.86 88.11
REMARK 500 2 CYS A 14 -135.72 -82.47
REMARK 500 2 SER A 15 -36.67 177.49
REMARK 500 2 VAL A 16 98.40 -58.06
REMARK 500 2 PHE A 36 -46.29 -132.64
REMARK 500 3 TYR A 2 42.65 -142.13
REMARK 500 3 TYR A 3 41.68 -95.78
REMARK 500 3 VAL A 7 52.84 -98.36
REMARK 500 3 HIS A 8 54.52 -94.38
REMARK 500 3 CYS A 9 103.60 -44.65
REMARK 500 3 THR A 10 -96.75 -73.87
REMARK 500 3 LYS A 11 25.16 -142.54
REMARK 500 3 SER A 12 32.37 -157.74
REMARK 500 3 CYS A 14 -71.55 -129.17
REMARK 500 3 ASN A 31 18.74 50.82
REMARK 500 3 ASN A 34 -58.23 -138.95
REMARK 500 4 TYR A 2 -12.08 78.02
REMARK 500 4 TYR A 3 39.79 25.23
REMARK 500 4 ASN A 5 -90.01 -81.17
REMARK 500 4 HIS A 8 65.26 68.75
REMARK 500 4 THR A 10 -56.87 -161.08
REMARK 500 4 LYS A 11 -103.84 -117.34
REMARK 500 4 CYS A 14 -68.73 -129.01
REMARK 500 4 SER A 15 85.38 63.94
REMARK 500 4 VAL A 16 65.15 -107.19
REMARK 500 4 ASN A 34 -72.00 -67.12
REMARK 500 5 SER A 12 44.71 -166.72
REMARK 500 5 CYS A 14 -58.35 -133.55
REMARK 500 6 TYR A 2 61.02 -174.77
REMARK 500 6 THR A 10 -159.65 -145.30
REMARK 500 6 LYS A 11 36.76 -99.37
REMARK 500 6 SER A 12 -43.40 -136.28
REMARK 500 6 CYS A 14 -140.37 -90.80
REMARK 500 6 SER A 15 81.62 44.75
REMARK 500 6 TRP A 18 -7.96 58.74
REMARK 500 6 ASN A 34 -65.82 -93.85
REMARK 500 7 TYR A 2 60.46 -169.29
REMARK 500 7 VAL A 7 -61.61 -166.37
REMARK 500 7 HIS A 8 85.36 62.84
REMARK 500 7 THR A 10 -78.20 -55.69
REMARK 500
REMARK 500 THIS ENTRY HAS 158 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 3LEU A 1 37 UNP P34034 LCCA_LEUGE 25 61
SEQRES 1 A 37 LYS TYR TYR GLY ASN GLY VAL HIS CYS THR LYS SER GLY
SEQRES 2 A 37 CYS SER VAL ASN TRP GLY GLU ALA PHE SER ALA GLY VAL
SEQRES 3 A 37 HIS ARG LEU ALA ASN GLY GLY ASN GLY PHE TRP
HELIX 1 1 TRP A 18 ASN A 31 1 14
SHEET 1 A 3 TYR A 2 GLY A 4 0
SHEET 2 A 3 GLY A 13 VAL A 16 -1
SHEET 3 A 3 VAL A 7 THR A 10 -1
SSBOND 1 CYS A 9 CYS A 14 1555 1555 2.04
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 16 20 Bytes