Header list of 2tpk.pdb file
Complete list - 25 20 Bytes
HEADER RNA 28-OCT-98 2TPK
TITLE AN INVESTIGATION OF THE STRUCTURE OF THE PSEUDOKNOT WITHIN THE GENE 32
TITLE 2 MESSENGER RNA OF BACTERIOPHAGE T2 USING HETERONUCLEAR NMR METHODS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RNA (MRNA PSEUDOKNOT);
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: RNA WAS CHEMICALLY SYNTHESIZED FROM GENE 32 OF
SOURCE 4 BACTERIOPHAGE T2.
KEYWDS PSEUDOKNOT, T2, RNA, RIBONUCLEIC ACID
EXPDTA SOLUTION NMR
AUTHOR J.A.HOLLAND,M.R.HANSEN,Z.DU,D.W.HOFFMAN
REVDAT 6 07-DEC-11 2TPK 1 JRNL VERSN
REVDAT 5 24-FEB-09 2TPK 1 VERSN
REVDAT 4 01-APR-03 2TPK 1 JRNL
REVDAT 3 19-JAN-00 2TPK 1 JRNL
REVDAT 2 22-DEC-99 2TPK 4 HEADER COMPND REMARK JRNL
REVDAT 2 2 4 ATOM SOURCE SEQRES
REVDAT 1 04-NOV-98 2TPK 0
JRNL AUTH J.A.HOLLAND,M.R.HANSEN,Z.DU,D.W.HOFFMAN
JRNL TITL AN EXAMINATION OF COAXIAL STACKING OF HELICAL STEMS IN A
JRNL TITL 2 PSEUDOKNOT MOTIF: THE GENE 32 MESSENGER RNA PSEUDOKNOT OF
JRNL TITL 3 BACTERIOPHAGE T2.
JRNL REF RNA V. 5 257 1999
JRNL REFN ISSN 1355-8382
JRNL PMID 10024177
JRNL DOI 10.1017/S1355838299981360
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH Z.DU,D.W.HOFFMAN
REMARK 1 TITL AN NMR AND MUTATIONAL STUDY OF THE PSEUDOKNOT WITHIN THE
REMARK 1 TITL 2 GENE 32 MRNA OF BACTERIOPHAGE T2: INSIGHTS INTO A FAMILY OF
REMARK 1 TITL 3 STRUCTURALLY RELATED RNA PSEUDOKNOTS
REMARK 1 REF NUCLEIC ACIDS RES. V. 25 1130 1997
REMARK 1 REFN ISSN 0305-1048
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMNET DETAILS CAN BE FOUND IN THE
REMARK 3 JRNL CITATION ABOVE.
REMARK 4
REMARK 4 2TPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-99.
REMARK 100 THE RCSB ID CODE IS RCSB008047.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; DQFCOSY; TOCSY; NOESY-
REMARK 210 TOCSY; CT-HSQC; HCCH-COSY; NOESY-
REMARK 210 HMQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : NULL
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : FELIX, XPLOR 3.1
REMARK 210 METHOD USED : DISTANCE GEOMETRY-SIMULATED
REMARK 210 ANNEALING AND ENERGY MINIZATION
REMARK 210 PROTOCOLS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 19
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING NMR SPECTROSCOPY ON
REMARK 210 13C,15N-LABELED AND SELECTIVELY DEUTERATED T2 PSEUDOKNOT SAMPLE
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HO2' A A 22 O5' C A 23 1.37
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 A A 5 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 A A 8 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES
REMARK 500 A A 8 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES
REMARK 500 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES
REMARK 500 G A 14 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 14 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 A A 15 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES
REMARK 500 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 G A 17 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 17 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 A A 20 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 A A 22 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 A A 24 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 G A 27 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 27 N7 - C8 - N9 ANGL. DEV. = 4.3 DEGREES
REMARK 500 G A 27 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 A A 30 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 A A 32 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 G A 33 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES
REMARK 500 G A 33 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 A A 35 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
DBREF 2TPK A 1 36 PDB 2TPK 2TPK 1 36
SEQRES 1 A 36 G C U G A C C A G C U A U
SEQRES 2 A 36 G A G G U C A U A C A U C
SEQRES 3 A 36 G U C A U A G C A C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 25 20 Bytes