Header list of 2sxl.pdb file
Complete list - 3 20 Bytes
HEADER RNA-BINDING DOMAIN 16-JUL-97 2SXL
TITLE SEX-LETHAL RBD1, NMR, MINIMIZED AVERAGE STRUCTURE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SEX-LETHAL PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RNA-BINDING DOMAIN 1 (RBD1), RESIDUES 122 - 209;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER;
SOURCE 3 ORGANISM_COMMON: FRUIT FLY;
SOURCE 4 ORGANISM_TAXID: 7227;
SOURCE 5 CELL_LINE: BL21;
SOURCE 6 ORGAN: FRUIT;
SOURCE 7 GENE: SEX-LETHAL;
SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PK7
KEYWDS RNA-BINDING DOMAIN, ALTERNATIVE SPLICING, RIKEN STRUCTURAL
KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS
EXPDTA SOLUTION NMR
AUTHOR M.INOUE,Y.MUTO,H.SAKAMOTO,T.KIGAWA,K.TAKIO,Y.SHIMURA,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 03-NOV-21 2SXL 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2SXL 1 VERSN
REVDAT 1 22-JUL-98 2SXL 0
JRNL AUTH M.INOUE,Y.MUTO,H.SAKAMOTO,T.KIGAWA,K.TAKIO,Y.SHIMURA,
JRNL AUTH 2 S.YOKOYAMA
JRNL TITL A CHARACTERISTIC ARRANGEMENT OF AROMATIC AMINO ACID RESIDUES
JRNL TITL 2 IN THE SOLUTION STRUCTURE OF THE AMINO-TERMINAL RNA-BINDING
JRNL TITL 3 DOMAIN OF DROSOPHILA SEX-LETHAL.
JRNL REF J.MOL.BIOL. V. 272 82 1997
JRNL REFN ISSN 0022-2836
JRNL PMID 9299339
JRNL DOI 10.1006/JMBI.1997.1213
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH C.OUBRIDGE,N.ITO,P.R.EVANS,C.H.TEO,K.NAGAI
REMARK 1 TITL CRYSTAL STRUCTURE AT 1.92 A RESOLUTION OF THE RNA-BINDING
REMARK 1 TITL 2 DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN COMPLEXED WITH AN RNA
REMARK 1 TITL 3 HAIRPIN
REMARK 1 REF NATURE V. 372 432 1994
REMARK 1 REFN ISSN 0028-0836
REMARK 1 REFERENCE 2
REMARK 1 AUTH A.L.LEE,R.KANAAR,D.C.RIO,D.E.WEMMER
REMARK 1 TITL RESONANCE ASSIGNMENTS AND SOLUTION STRUCTURE OF THE SECOND
REMARK 1 TITL 2 RNA-BINDING DOMAIN OF SEX-LETHAL DETERMINED BY
REMARK 1 TITL 3 MULTIDIMENSIONAL HETERONUCLEAR MAGNETIC RESONANCE
REMARK 1 REF BIOCHEMISTRY V. 33 13775 1994
REMARK 1 REFN ISSN 0006-2960
REMARK 1 REFERENCE 3
REMARK 1 AUTH D.S.GARRETT,P.J.LODI,Y.SHAMOO,K.R.WILLIAMS,G.M.CLORE,
REMARK 1 AUTH 2 A.M.GRONENBORN
REMARK 1 TITL DETERMINATION OF THE SECONDARY STRUCTURE AND FOLDING
REMARK 1 TITL 2 TOPOLOGY OF AN RNA BINDING DOMAIN OF MAMMALIAN HNRNP A1
REMARK 1 TITL 3 PROTEIN USING THREE-DIMENSIONAL HETERONUCLEAR MAGNETIC
REMARK 1 TITL 4 RESONANCE SPECTROSCOPY
REMARK 1 REF BIOCHEMISTRY V. 33 2852 1994
REMARK 1 REFN ISSN 0006-2960
REMARK 1 REFERENCE 4
REMARK 1 AUTH M.WITTEKIND,M.GORLACH,M.FRIEDRICHS,G.DREYFUSS,L.MUELLER
REMARK 1 TITL 1H, 13C, AND 15N NMR ASSIGNMENTS AND GLOBAL FOLDING PATTERN
REMARK 1 TITL 2 OF THE RNA-BINDING DOMAIN OF THE HUMAN HNRNP C PROTEINS
REMARK 1 REF BIOCHEMISTRY V. 31 6254 1992
REMARK 1 REFN ISSN 0006-2960
REMARK 1 REFERENCE 5
REMARK 1 AUTH K.NAGAI,C.OUBRIDGE,T.H.JESSEN,J.LI,P.R.EVANS
REMARK 1 TITL CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF THE U1 SMALL
REMARK 1 TITL 2 NUCLEAR RIBONUCLEOPROTEIN A
REMARK 1 REF NATURE V. 348 515 1990
REMARK 1 REFN ISSN 0028-0836
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT WAS DONE USING THE HYBRID
REMARK 3 DISTANCE GEOMETRY/SIMULATED ANNEALING METHOD (NILGES, M., CLORE,
REMARK 3 G.M., & GRONENBORN, A.M. (1988) FEBS LETT 229, 317-324) AS
REMARK 3 CONTAINED IN X-PLOR PROGRAM VERSION 3.1 (BRUNGER, 1992). THE
REMARK 3 RMSD FOR THE BACKBONE COORDINATES OF THE 20 STRUCTURES ACCEPTED
REMARK 3 AFTER THE LAST ROUND OF REFINEMENT COMPARED TO THE AVERAGE
REMARK 3 COORDINATES WAS 0.86 (FOR RESIDUES INVOLVED IN SECONDARY
REMARK 3 STRUCTURE).
REMARK 4
REMARK 4 2SXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000178658.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 4.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; ROESY; DQF-COSY;
REMARK 210 1H-15N 2D HSQC; 1H-15N 2D HMQC-J;
REMARK 210 15N-EDITED NOESY-HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : AMX500; AMX600
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : X-PLOR 3.1
REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY/
REMARK 210 SIMULATED ANNEALING METHOD
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : SMALLEST RESIDUAL ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 3 114.51 136.03
REMARK 500 GLN A 13 -2.23 75.73
REMARK 500 LEU A 23 -64.02 -98.31
REMARK 500 LYS A 40 -67.69 -99.75
REMARK 500 TYR A 47 129.21 161.03
REMARK 500 THR A 53 23.15 47.82
REMARK 500 MET A 56 -77.57 -148.72
REMARK 500 VAL A 64 -73.19 -92.34
REMARK 500 ASN A 66 102.37 -47.44
REMARK 500 ILE A 68 -119.96 -92.33
REMARK 500 VAL A 70 54.76 -101.61
REMARK 500 ARG A 71 18.71 52.28
REMARK 500 ASN A 72 -29.30 -179.33
REMARK 500 LYS A 73 -154.40 -135.21
REMARK 500 TYR A 79 45.13 -83.35
REMARK 500 ARG A 81 55.81 -154.26
REMARK 500 GLU A 85 95.48 45.35
REMARK 500 ILE A 87 141.98 77.58
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 18 0.13 SIDE CHAIN
REMARK 500 ARG A 25 0.28 SIDE CHAIN
REMARK 500 ARG A 34 0.21 SIDE CHAIN
REMARK 500 ARG A 37 0.25 SIDE CHAIN
REMARK 500 ARG A 60 0.31 SIDE CHAIN
REMARK 500 ARG A 71 0.08 SIDE CHAIN
REMARK 500 ARG A 74 0.23 SIDE CHAIN
REMARK 500 ARG A 81 0.31 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MY_001000017.1 RELATED DB: TARGETDB
DBREF 2SXL A 1 88 UNP P19339 SXL_DROME 122 209
SEQADV 2SXL TYR A 45 UNP P19339 PHE 166 ENGINEERED MUTATION
SEQRES 1 A 88 ALA SER ASN THR ASN LEU ILE VAL ASN TYR LEU PRO GLN
SEQRES 2 A 88 ASP MET THR ASP ARG GLU LEU TYR ALA LEU PHE ARG ALA
SEQRES 3 A 88 ILE GLY PRO ILE ASN THR CYS ARG ILE MET ARG ASP TYR
SEQRES 4 A 88 LYS THR GLY TYR SER TYR GLY TYR ALA PHE VAL ASP PHE
SEQRES 5 A 88 THR SER GLU MET ASP SER GLN ARG ALA ILE LYS VAL LEU
SEQRES 6 A 88 ASN GLY ILE THR VAL ARG ASN LYS ARG LEU LYS VAL SER
SEQRES 7 A 88 TYR ALA ARG PRO GLY GLY GLU SER ILE LYS
HELIX 1 H1 THR A 16 GLY A 28 1 13
HELIX 2 H2 GLU A 55 ASN A 66 1 12
SHEET 1 S1 4 ILE A 30 MET A 36 0
SHEET 2 S1 4 TYR A 47 PHE A 52 -1 O PHE A 49 N ARG A 34
SHEET 3 S1 4 ASN A 5 ASN A 9 -1 N LEU A 6 O VAL A 50
SHEET 4 S1 4 LYS A 76 TYR A 79 -1 N LYS A 76 O ASN A 9
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 3 20 Bytes