Header list of 2nmb.pdb file
Complete list - r 16 2 Bytes
HEADER CELL CYCLE/GENE REGULATION 29-OCT-98 2NMB
TITLE DNUMB PTB DOMAIN COMPLEXED WITH A PHOSPHOTYROSINE PEPTIDE, NMR,
TITLE 2 ENSEMBLE OF STRUCTURES.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEIN (NUMB PROTEIN);
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: PTB DOMAIN;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: PROTEIN (GPPY PEPTIDE);
COMPND 8 CHAIN: B;
COMPND 9 ENGINEERED: YES;
COMPND 10 OTHER_DETAILS: CHEMICALLY SYNTHESIZED
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER;
SOURCE 3 ORGANISM_COMMON: FRUIT FLY;
SOURCE 4 ORGANISM_TAXID: 7227;
SOURCE 5 GENE: NUMB;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T2;
SOURCE 10 MOL_ID: 2;
SOURCE 11 SYNTHETIC: YES
KEYWDS COMPLEX, SIGNAL TRANSDUCTION, PHOSPHOTYROSINE BINDING DOMAIN (PTB),
KEYWDS 2 ASYMETR IC CELL DIVISION, CELL CYCLE-GENE REGULATION COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 14
AUTHOR S.-C.LI,C.ZWAHLEN,S.J.F.VINCENT,C.J.MCGLADE,T.PAWSON,J.D.FORMAN-KAY
REVDAT 6 16-MAR-22 2NMB 1 REMARK LINK
REVDAT 5 24-FEB-09 2NMB 1 VERSN
REVDAT 4 01-APR-03 2NMB 1 JRNL
REVDAT 3 26-SEP-01 2NMB 3 ATOM
REVDAT 2 20-JAN-00 2NMB 4 HEADER COMPND REMARK JRNL
REVDAT 2 2 4 ATOM SOURCE SEQRES
REVDAT 1 04-NOV-98 2NMB 0
JRNL AUTH S.C.LI,C.ZWAHLEN,S.J.VINCENT,C.J.MCGLADE,L.E.KAY,T.PAWSON,
JRNL AUTH 2 J.D.FORMAN-KAY
JRNL TITL STRUCTURE OF A NUMB PTB DOMAIN-PEPTIDE COMPLEX SUGGESTS A
JRNL TITL 2 BASIS FOR DIVERSE BINDING SPECIFICITY.
JRNL REF NAT.STRUCT.BIOL. V. 5 1075 1998
JRNL REFN ISSN 1072-8368
JRNL PMID 9846878
JRNL DOI 10.1038/4185
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH S.-C.LI,Z.SONGYANG,S.J.F.VINCENT,C.ZWAHLEN,S.WILEY,
REMARK 1 AUTH 2 L.CANTLEY,L.E.KAY,J.D.FORMAN-KAY,T.PAWSON
REMARK 1 TITL HIGH-AFFINITY BINDING OF THE DROSOPHILA NUMB
REMARK 1 TITL 2 PHOSPHOTYROSINE-BINDING DOMAIN TO PEP TIDES CONTAINING A
REMARK 1 TITL 3 GLY-PRO-(P)TYR MOTIF
REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 94 7204 1997
REMARK 1 REFN ISSN 0027-8424
REMARK 1 DOI 10.1073/PNAS.94.14.7204
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.851
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: MODIFICATION OF X-PLOR TO INCORPORATE
REMARK 3 ARIA PROTOCOL FOR AMBIGUOUS NOE ASSIGNMENT.
REMARK 4
REMARK 4 2NMB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB.
REMARK 100 THE DEPOSITION ID IS D_1000001415.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCACB; CBCACONNH;
REMARK 210 HAHBCBCACONNH; CCCTOCSYCONNH;
REMARK 210 HCCTOCSYCONNH; HCCHTOCSY; N-
REMARK 210 NOESY HSQC; CN-NOESY; C-HSQC-
REMARK 210 NOESY; VAL-CB-NOESY; HALF-FILTER-
REMARK 210 NOESY; FILTER-TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : UNITYPLUS; INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : ARIA/X-PLOR 3.851
REMARK 210 METHOD USED : SIMULATED ANNEALING WITH
REMARK 210 AMBIGUOUS RESTRAINTS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14
REMARK 210 CONFORMERS, SELECTION CRITERIA : NO NOE VIOLATION > 0.3 A
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4
REMARK 210
REMARK 210 REMARK: NOE MIXING TIME 50MS AND 90MS FOR N-NOESY-HSQC, C-HSQC
REMARK 210 -NOESY, CN-NOESY NOE MIXING TIME 150MS FOR HALF-FILTER-NOESY,
REMARK 210 FILTER-NOESY
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-14
REMARK 465 RES C SSSEQI
REMARK 465 GLY A 52
REMARK 465 SER A 53
REMARK 465 PRO A 54
REMARK 465 GLY A 55
REMARK 465 ILE A 56
REMARK 465 PRO A 57
REMARK 465 ASP A 58
REMARK 465 ARG A 59
REMARK 465 VAL A 60
REMARK 465 PRO A 61
REMARK 465 GLU A 62
REMARK 465 SER A 63
REMARK 465 SER A 211
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O CYS A 81 HG SER A 82 1.58
REMARK 500 O ASP A 126 H ILE A 144 1.60
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LYS A 65 175.22 52.24
REMARK 500 1 PRO A 66 105.67 -44.84
REMARK 500 1 HIS A 67 -82.05 171.20
REMARK 500 1 ALA A 79 78.51 65.92
REMARK 500 1 THR A 80 60.03 176.19
REMARK 500 1 SER A 82 153.96 174.16
REMARK 500 1 VAL A 85 160.30 178.67
REMARK 500 1 LYS A 86 71.27 -111.31
REMARK 500 1 TYR A 87 107.95 -55.02
REMARK 500 1 LEU A 88 -76.24 -48.50
REMARK 500 1 GLU A 95 -74.29 -144.84
REMARK 500 1 SER A 96 19.48 59.45
REMARK 500 1 SER A 112 -165.74 -79.87
REMARK 500 1 ARG A 113 42.44 -109.41
REMARK 500 1 SER A 124 44.94 -142.82
REMARK 500 1 ASP A 126 -40.03 -164.94
REMARK 500 1 ARG A 129 78.94 -117.99
REMARK 500 1 VAL A 140 67.45 -111.48
REMARK 500 1 PHE A 149 174.66 80.86
REMARK 500 1 ASP A 153 -80.91 -41.49
REMARK 500 1 ARG A 154 23.26 -156.67
REMARK 500 1 ASN A 155 29.64 44.25
REMARK 500 1 GLU A 157 25.33 -157.33
REMARK 500 1 SER A 161 134.05 -172.26
REMARK 500 1 ASP A 166 -90.16 50.84
REMARK 500 1 THR A 168 25.15 -140.96
REMARK 500 1 ARG A 170 -72.29 86.74
REMARK 500 1 TRP A 172 90.17 -56.01
REMARK 500 1 ASP A 182 83.05 63.27
REMARK 500 1 SER A 183 28.88 -172.22
REMARK 500 1 ARG A 186 -42.72 -159.63
REMARK 500 1 LEU A 199 51.91 -117.54
REMARK 500 1 ALA A 209 103.21 69.06
REMARK 500 1 TYR B 2 -89.69 -163.34
REMARK 500 1 PTR B 6 -67.65 177.44
REMARK 500 2 LYS A 65 70.92 48.44
REMARK 500 2 PRO A 66 -77.25 -56.59
REMARK 500 2 HIS A 67 -69.87 -154.04
REMARK 500 2 ALA A 79 90.09 49.21
REMARK 500 2 THR A 80 44.63 179.50
REMARK 500 2 ARG A 97 23.90 -148.30
REMARK 500 2 ARG A 114 92.71 -46.05
REMARK 500 2 ASP A 126 -44.30 -133.92
REMARK 500 2 VAL A 140 65.86 -111.11
REMARK 500 2 ASP A 141 66.92 -68.16
REMARK 500 2 THR A 143 -176.62 -54.19
REMARK 500 2 PHE A 149 149.56 73.66
REMARK 500 2 ALA A 151 80.83 171.75
REMARK 500 2 ARG A 154 31.14 -172.34
REMARK 500 2 GLU A 157 19.18 -152.24
REMARK 500
REMARK 500 THIS ENTRY HAS 449 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 2NMB A 52 205 UNP P16554 NUMB_DROME 52 205
DBREF 2NMB B 1 7 PDB 2NMB 2NMB 1 7
SEQADV 2NMB THR A 206 UNP P16554 SEE REMARK 999
SEQADV 2NMB ARG A 207 UNP P16554 SEE REMARK 999
SEQADV 2NMB ALA A 208 UNP P16554 SEE REMARK 999
SEQADV 2NMB ALA A 209 UNP P16554 SEE REMARK 999
SEQADV 2NMB ALA A 210 UNP P16554 SEE REMARK 999
SEQRES 1 A 160 GLY SER PRO GLY ILE PRO ASP ARG VAL PRO GLU SER SER
SEQRES 2 A 160 LYS PRO HIS GLN TRP GLN ALA ASP GLU GLU ALA VAL ARG
SEQRES 3 A 160 SER ALA THR CYS SER PHE SER VAL LYS TYR LEU GLY CYS
SEQRES 4 A 160 VAL GLU VAL PHE GLU SER ARG GLY MET GLN VAL CYS GLU
SEQRES 5 A 160 GLU ALA LEU LYS VAL LEU ARG GLN SER ARG ARG ARG PRO
SEQRES 6 A 160 VAL ARG GLY LEU LEU HIS VAL SER GLY ASP GLY LEU ARG
SEQRES 7 A 160 VAL VAL ASP ASP GLU THR LYS GLY LEU ILE VAL ASP GLN
SEQRES 8 A 160 THR ILE GLU LYS VAL SER PHE CYS ALA PRO ASP ARG ASN
SEQRES 9 A 160 HIS GLU ARG GLY PHE SER TYR ILE CYS ARG ASP GLY THR
SEQRES 10 A 160 THR ARG ARG TRP MET CYS HIS GLY PHE LEU ALA CYS LYS
SEQRES 11 A 160 ASP SER GLY GLU ARG LEU SER HIS ALA VAL GLY CYS ALA
SEQRES 12 A 160 PHE ALA VAL CYS LEU GLU ARG LYS GLN ARG ARG THR ARG
SEQRES 13 A 160 ALA ALA ALA SER
SEQRES 1 B 7 ALA TYR ILE GLY PRO PTR LEU
MODRES 2NMB PTR B 6 TYR O-PHOSPHOTYROSINE
HET PTR B 6 24
HETNAM PTR O-PHOSPHOTYROSINE
HETSYN PTR PHOSPHONOTYROSINE
FORMUL 2 PTR C9 H12 N O6 P
HELIX 1 1 GLN A 68 ALA A 79 1 12
HELIX 2 2 MET A 99 SER A 112 1 14
HELIX 3 3 LEU A 187 PHE A 195 1 9
SHEET 1 A 5 ARG A 129 ASP A 132 0
SHEET 2 A 5 GLY A 119 HIS A 122 -1 N LEU A 120 O VAL A 131
SHEET 3 A 5 PHE A 83 GLU A 92 -1 O PHE A 83 N LEU A 121
SHEET 4 A 5 TRP A 172 ALA A 179 -1 O CYS A 174 N VAL A 91
SHEET 5 A 5 ILE A 163 ARG A 165 -1 O CYS A 164 N MET A 173
LINK C PRO B 5 N PTR B 6 1555 1555 1.33
LINK C PTR B 6 N LEU B 7 1555 1555 1.33
CISPEP 1 GLY B 4 PRO B 5 8 6.21
CISPEP 2 GLY B 4 PRO B 5 12 4.56
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 16 2 Bytes