Header list of 2gm0.pdb file
Complete list - r 9 2 Bytes
HEADER RNA 05-APR-06 2GM0
TITLE LINEAR DIMER OF STEMLOOP SL1 FROM HIV-1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RNA (35-MER);
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: STEM-LOOP SL1
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: RNA WAS PREPARED BY IN VITRO TRANSCRIPTION WITH T7
SOURCE 4 RNA POLYMERASE
KEYWDS LINEAR DIMER, A-RICH INTERNAL LOOP, G-RICH INTERNAL LOOP, RNA
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR N.B.ULYANOV,A.MUJEEB,Z.DU,M.TONELLI,T.G.PARSLOW,T.L.JAMES
REVDAT 4 09-MAR-22 2GM0 1 REMARK
REVDAT 3 24-FEB-09 2GM0 1 VERSN
REVDAT 2 20-JUN-06 2GM0 1 JRNL
REVDAT 1 25-APR-06 2GM0 0
JRNL AUTH N.B.ULYANOV,A.MUJEEB,Z.DU,M.TONELLI,T.G.PARSLOW,T.L.JAMES
JRNL TITL NMR STRUCTURE OF THE FULL-LENGTH LINEAR DIMER OF STEM-LOOP-1
JRNL TITL 2 RNA IN THE HIV-1 DIMER INITIATION SITE.
JRNL REF J.BIOL.CHEM. V. 281 16168 2006
JRNL REFN ISSN 0021-9258
JRNL PMID 16603544
JRNL DOI 10.1074/JBC.M601711200
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1, DYANA 1.5, MINICARLO
REMARK 3 AUTHORS : GUNTERT (DYANA), ZHURKIN & ULYANOV (MINICARLO)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE DETERMINED BASED ON
REMARK 3 A TOTAL OF 842 RESTRAINTS; 608 ARE NOE-DERIVED DISTANCE
REMARK 3 RESTRAINTS, 104 HYDROGEN BOND RESTRAINTS, AND 130 RESIDUAL
REMARK 3 DIPOLAR COUPLING (RDC) RESTRAINTS
REMARK 4
REMARK 4 2GM0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-06.
REMARK 100 THE DEPOSITION ID IS D_1000037280.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303; 288
REMARK 210 PH : 6.4; 6.4
REMARK 210 IONIC STRENGTH : 10 MM POTASSIUM PHOSPHATE
REMARK 210 BUFFER, 250 MM NACL, 0.1 MM MG
REMARK 210 CL2; 10 MM POTASSIUM PHOSPHATE
REMARK 210 BUFFER, 250 MM NACL, 0.1 MM MG
REMARK 210 CL2
REMARK 210 PRESSURE : AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.75 MM UNLABELED SL1 RNA, 10 MM
REMARK 210 POTASSIUM PHOSPHATE BUFFER, 250
REMARK 210 MM NACL, 0.1 MM MGCL2, PH 6.4,
REMARK 210 D2O; 0.75 MM UNLABELED SL1 RNA,
REMARK 210 10 MM POTASSIUM PHOSPHATE BUFFER,
REMARK 210 250 MM NACL, 0.1 MM MGCL2,PH
REMARK 210 6.4, 90% H2O, 10% D2O; 0.75 MM
REMARK 210 OF UNIFORMLY 13C, 15N-LABELED
REMARK 210 SL1 RNA, 10 MM POTASSIUM
REMARK 210 PHOSPHATE BUFFER, 250 MM NACL,
REMARK 210 0.1 MM MGCL2, PH 6.4, D2O; 0.75
REMARK 210 MM OF UNIFORMLY 13C, 15N-LABELED
REMARK 210 SL1 RNA, 10 MM POTASSIUM
REMARK 210 PHOSPHATE BUFFER, 250 MM NACL,
REMARK 210 0.1 MM MGCL2, PH 6.4, 90% H2O,
REMARK 210 10% D2O; 0.75 MM OF UNIFORMLY
REMARK 210 13C, 15N-LABELED SL1 RNA, 10 MM
REMARK 210 POTASSIUM PHOSPHATE BUFFER, 250
REMARK 210 MM NACL, 0.1 MM MGCL2, PH 6.4,
REMARK 210 FILAMENTOUS PHAGE PF1, D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_13C
REMARK 210 -SEPARATED_NOESY; NON-DECOUPLED
REMARK 210 CONSTANT-TIME 1H-13C TROSY-HSQC;
REMARK 210 2D 1H-15N HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA; UNITY INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 2.3, MARDIGRAS 3.21,
REMARK 210 SPARKY 3.110
REMARK 210 METHOD USED : RESTRAINED METROPOLIS MONTE
REMARK 210 CARLO AND RESTRAINED
REMARK 210 MINIMIZATION IN HELICAL
REMARK 210 PARAMETER'S SPACE
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 20
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 10 A A 21 C3' - C2' - C1' ANGL. DEV. = 5.5 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
DBREF 2GM0 A 1 35 PDB 2GM0 2GM0 1 35
DBREF 2GM0 B 36 70 PDB 2GM0 2GM0 36 70
SEQRES 1 A 35 G A C G G C U U G C U G A
SEQRES 2 A 35 A G C G C G C A C G G C A
SEQRES 3 A 35 A G A G G C G U C
SEQRES 1 B 35 G A C G G C U U G C U G A
SEQRES 2 B 35 A G C G C G C A C G G C A
SEQRES 3 B 35 A G A G G C G U C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes