Header list of 2gip.pdb file
Complete list - r 9 2 Bytes
HEADER RNA 29-MAR-06 2GIP
TITLE SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA FROM
TITLE 2 BRADYRHIZOBIUM JANPONICUM HAVING DELETED G83
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 28-MER;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MUTATION: YES;
COMPND 6 OTHER_DETAILS: DELG83 MICROROSE RNA
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: THE SEQUENCE FOR THIS RNA NATURALLY OCCURS IN
SOURCE 4 BRADYRHIZOBIUM JAPONICUM.
KEYWDS A FORM RNA HELIX, RNA
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.CHOWDHURY,C.MARIS,F.H.ALLAIN,F.NARBERHAUS
REVDAT 3 09-MAR-22 2GIP 1 REMARK
REVDAT 2 24-FEB-09 2GIP 1 VERSN
REVDAT 1 20-JUN-06 2GIP 0
JRNL AUTH S.CHOWDHURY,C.MARIS,F.H.ALLAIN,F.NARBERHAUS
JRNL TITL MOLECULAR BASIS FOR TEMPERATURE SENSING BY AN RNA
JRNL TITL 2 THERMOMETER.
JRNL REF EMBO J. V. 25 2487 2006
JRNL REFN ISSN 0261-4189
JRNL PMID 16710302
JRNL DOI 10.1038/SJ.EMBOJ.7601128
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : AMBER 7
REMARK 3 AUTHORS : DAVID CASE ET AL.
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: 20 STRUCTURES
REMARK 4
REMARK 4 2GIP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-06.
REMARK 100 THE DEPOSITION ID IS D_1000037167.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 30MM NACL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : RNA
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D-NOESY-13CHSQC; 2D-NOESY; 2D
REMARK 210 -HSQC; TOCSY; HCCHTOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ
REMARK 210 SPECTROMETER MODEL : DRX AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : DYANA
REMARK 210 METHOD USED : NMR
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 50
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES
REMARK 500 2 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES
REMARK 500 3 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES
REMARK 500 4 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES
REMARK 500 5 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.4 DEGREES
REMARK 500 5 G A 16 O4' - C1' - N9 ANGL. DEV. = 7.0 DEGREES
REMARK 500 6 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES
REMARK 500 7 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES
REMARK 500 8 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES
REMARK 500 9 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES
REMARK 500 10 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.4 DEGREES
REMARK 500 10 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES
REMARK 500 11 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.5 DEGREES
REMARK 500 11 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES
REMARK 500 12 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES
REMARK 500 13 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES
REMARK 500 14 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.5 DEGREES
REMARK 500 14 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES
REMARK 500 15 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES
REMARK 500 16 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES
REMARK 500 17 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES
REMARK 500 18 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES
REMARK 500 19 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES
REMARK 500 20 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
DBREF 2GIP A 1 28 PDB 2GIP 2GIP 1 28
SEQRES 1 A 28 G G C C A U C U U C U C U
SEQRES 2 A 28 U C G G A G G A U U U G G
SEQRES 3 A 28 C C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes