Header list of 2g9p.pdb file
Complete list - 9 20 Bytes
HEADER ANTIMICROBIAL PROTEIN 07-MAR-06 2G9P
TITLE NMR STRUCTURE OF A NOVEL ANTIMICROBIAL PEPTIDE, LATARCIN 2A, FROM
TITLE 2 SPIDER (LACHESANA TARABAEVI) VENOM
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ANTIMICROBIAL PEPTIDE LATARCIN 2A;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE
SOURCE 4 CAN BE NATURALLY FOUND IN SPIDER (LACHESANA TARABAEVI) VENOM
KEYWDS HELIX-HINGE-HELIX, ANTIMICROBIAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR P.V.DUBOVSKII,P.E.VOLYNSKY,A.A.POLYANSKY,V.V.CHUPIN,R.G.EFREMOV,
AUTHOR 2 A.S.ARSENIEV
REVDAT 3 09-MAR-22 2G9P 1 REMARK
REVDAT 2 24-FEB-09 2G9P 1 VERSN
REVDAT 1 12-SEP-06 2G9P 0
JRNL AUTH P.V.DUBOVSKII,P.E.VOLYNSKY,A.A.POLYANSKY,V.V.CHUPIN,
JRNL AUTH 2 R.G.EFREMOV,A.S.ARSENIEV
JRNL TITL SPATIAL STRUCTURE AND ACTIVITY MECHANISM OF A NOVEL SPIDER
JRNL TITL 2 ANTIMICROBIAL PEPTIDE.
JRNL REF BIOCHEMISTRY V. 45 10759 2006
JRNL REFN ISSN 0006-2960
JRNL PMID 16939228
JRNL DOI 10.1021/BI060635W
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1.C., FANMEM
REMARK 3 AUTHORS : VARIAN, CO (VNMR), VON FREYBERG, B., BRAUN, W.,
REMARK 3 NOLDE, D.E., VOLYNSKY, P.E., ARSENIEV, A.S.,
REMARK 3 EFREMOV, R.G. (FANMEM)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: IN TOTAL, 222 DISTANCE AND 123 TORSION
REMARK 3 ANGLES CONSTRAINTS WERE USED FOR STRUCTURE CALCULATION
REMARK 4
REMARK 4 2G9P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-06.
REMARK 100 THE DEPOSITION ID IS D_1000036864.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 318; 318
REMARK 210 PH : 6.8; 6.8
REMARK 210 IONIC STRENGTH : NO SALT; NO SALT
REMARK 210 PRESSURE : AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.7 MM LTC2A; 102 MM SDS-D25,
REMARK 210 95% H2O, 5% D2O; 1.7 MM LTC2A;
REMARK 210 102 MM SDS-D25, 100 % D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : UNITY; DRX
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR 3.1.A, CYANA 1.0.6.,
REMARK 210 XEASY 40300000, MOLMOL 2K.1
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS FOLLOWED
REMARK 210 BY REFINEMENT IN IMPLICIT
REMARK 210 MEMBRANE MODEL (WATER/OCTANOL/
REMARK 210 WATER SLAB)
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D
REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 6 LEU A 2 -55.95 -162.54
REMARK 500 6 ARG A 23 87.43 -169.89
REMARK 500 7 LEU A 2 -56.16 -162.66
REMARK 500 7 ARG A 23 88.40 -169.79
REMARK 500 9 LYS A 25 -71.33 -92.52
REMARK 500 11 LEU A 2 -55.19 -162.41
REMARK 500 11 ARG A 23 83.69 -168.76
REMARK 500 13 LEU A 2 -55.96 -162.66
REMARK 500 13 ARG A 12 29.38 -164.64
REMARK 500 14 ARG A 12 29.75 -164.54
REMARK 500 14 ARG A 23 54.81 -140.50
REMARK 500 16 LEU A 2 -56.84 -161.81
REMARK 500 16 ARG A 12 29.80 -164.56
REMARK 500 16 ARG A 23 77.21 -162.66
REMARK 500 17 ARG A 23 88.54 -169.96
REMARK 500 18 ARG A 23 88.43 -169.68
REMARK 500 19 ARG A 12 32.12 -164.62
REMARK 500 19 ARG A 23 82.10 -165.85
REMARK 500 20 LEU A 2 -55.65 -162.23
REMARK 500 20 ARG A 12 30.19 -164.61
REMARK 500
REMARK 500 REMARK: NULL
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THE SEQUENCE OF THE PROTEIN HAS NOT BEEN DEPOSITED
REMARK 999 INTO ANY SEQUENCE DATABASE.
DBREF 2G9P A 1 26 UNP Q1ELU1 Q1ELU1_9ARAC 59 84
SEQRES 1 A 26 GLY LEU PHE GLY LYS LEU ILE LYS LYS PHE GLY ARG LYS
SEQRES 2 A 26 ALA ILE SER TYR ALA VAL LYS LYS ALA ARG GLY LYS HIS
HELIX 1 1 GLY A 1 GLY A 11 1 11
HELIX 2 2 ARG A 12 ALA A 22 1 11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 9 20 Bytes