Header list of 2g9o.pdb file
Complete list - t 20 2 Bytes
HEADER HYDROLASE 07-MAR-06 2G9O TITLE SOLUTION STRUCTURE OF THE APO FORM OF THE THIRD METAL-BINDING DOMAIN TITLE 2 OF ATP7A PROTEIN (MENKES DISEASE PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-TRANSPORTING ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SIXTH SOLUBLE DOMAIN, RESIDUES 275-352; COMPND 5 SYNONYM: COPPER PUMP 1, MENKES DISEASE-ASSOCIATED PROTEIN; COMPND 6 EC: 3.6.3.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATP7A, MC1, MNK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS MENKES DISEASE, SOLUTION STRUCTURE, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 PROTEOMICS IN EUROPE, SPINE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR L.BANCI,I.BERTINI,F.CANTINI,N.DELLAMALVA,A.ROSATO,T.HERRMANN, AUTHOR 2 K.WUTHRICH,STRUCTURAL PROTEOMICS IN EUROPE (SPINE) REVDAT 4 20-OCT-21 2G9O 1 REMARK SEQADV REVDAT 3 24-FEB-09 2G9O 1 VERSN REVDAT 2 10-OCT-06 2G9O 1 JRNL REVDAT 1 01-AUG-06 2G9O 0 JRNL AUTH L.BANCI,I.BERTINI,F.CANTINI,N.DELLAMALVA,T.HERRMANN, JRNL AUTH 2 A.ROSATO,K.WUTHRICH JRNL TITL SOLUTION STRUCTURE AND INTERMOLECULAR INTERACTIONS OF THE JRNL TITL 2 THIRD METAL-BINDING DOMAIN OF ATP7A, THE MENKES DISEASE JRNL TITL 3 PROTEIN. JRNL REF J.BIOL.CHEM. V. 281 29141 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16873374 JRNL DOI 10.1074/JBC.M603176200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, AMBER 8.0 REMARK 3 AUTHORS : CASE, D.A. ET AL. (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1456 MEANINGFUL NOE UPPER DISTANCE REMARK 3 LIMITS, 134 DIHEDRAL ANGLES RESTRAINTS WERE USED FOR STRUCTURE REMARK 3 CALCULATIONS REMARK 4 REMARK 4 2G9O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036863. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100MM PHOSPHATE BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM APO-MNK3 UNLABELLED REMARK 210 SAMPLE, 100MM PHOSPHATE BUFFER, REMARK 210 PH 7.0, 1MM DTT,90% H2O, 10% D2O; REMARK 210 1MM APO-MNK3 15N LABELLED REMARK 210 SAMPLE, 100MM PHOSPHATE BUFFER, REMARK 210 PH 7.0, 1MM DTT, 90% H2O, 10% REMARK 210 D2O; 1MM APO-MNK3 15N, 13C REMARK 210 LABELLED SAMPLE, 100MM PHOSPHATE REMARK 210 BUFFER, PH 7.0, 1MM DTT, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_15N REMARK 210 -SEPARATED_NOESY; (H)CCH-TOCSY; REMARK 210 CBCA(CO)NH; CBCANH; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3, CARA, ATNOSCANDID 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS COUPLED REMARK 210 WITH SIMULATED ANNEALING REMARK 210 FOLLOWED BY RESTRAINED ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLU A 78 REMARK 465 ILE A 79 REMARK 465 GLU A 80 REMARK 465 GLY A 81 REMARK 465 ARG A 82 REMARK 465 LEU A 83 REMARK 465 GLU A 84 REMARK 465 HIS A 85 REMARK 465 HIS A 86 REMARK 465 HIS A 87 REMARK 465 HIS A 88 REMARK 465 HIS A 89 REMARK 465 HIS A 90 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 3 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 4 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 5 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 6 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 8 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 8 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 8 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 10 TYR A 69 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 13 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 14 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 14 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 15 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 16 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 16 TYR A 69 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 17 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 17 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 18 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 19 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 20 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 21 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 22 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 22 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 23 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 23 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 24 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 24 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 27 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 28 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 29 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 29 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 29 TYR A 69 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 30 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 30 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 13 33.78 -73.64 REMARK 500 1 CYS A 14 -143.43 66.30 REMARK 500 1 GLN A 29 -2.84 -58.99 REMARK 500 1 SER A 33 176.67 176.79 REMARK 500 1 TYR A 47 -165.28 -121.88 REMARK 500 1 ALA A 49 137.98 176.06 REMARK 500 1 VAL A 52 108.04 -44.78 REMARK 500 2 ASP A 10 39.01 -78.14 REMARK 500 2 HIS A 13 9.22 -66.59 REMARK 500 2 CYS A 14 -54.11 81.91 REMARK 500 2 LYS A 15 -57.10 -125.42 REMARK 500 2 TYR A 30 -20.63 159.73 REMARK 500 2 SER A 33 172.84 178.76 REMARK 500 2 ARG A 41 40.99 -76.35 REMARK 500 2 ALA A 49 132.80 -178.51 REMARK 500 2 SER A 51 117.16 -170.62 REMARK 500 3 ASP A 10 42.55 -81.81 REMARK 500 3 HIS A 13 27.39 -66.04 REMARK 500 3 CYS A 14 -129.53 53.50 REMARK 500 3 SER A 26 6.19 -69.98 REMARK 500 3 SER A 33 174.12 176.91 REMARK 500 3 ARG A 41 38.32 -78.50 REMARK 500 4 CYS A 14 -141.46 64.76 REMARK 500 4 SER A 26 13.05 -67.84 REMARK 500 4 TYR A 30 -20.77 166.73 REMARK 500 4 SER A 33 167.19 178.16 REMARK 500 4 ILE A 34 149.22 -171.64 REMARK 500 4 ALA A 49 105.40 -167.16 REMARK 500 4 SER A 65 59.32 -144.35 REMARK 500 5 HIS A 13 6.62 -64.86 REMARK 500 5 CYS A 14 -40.13 76.88 REMARK 500 5 LYS A 15 -85.20 -115.67 REMARK 500 5 SER A 33 174.63 179.17 REMARK 500 5 ALA A 49 147.29 -171.76 REMARK 500 5 ARG A 70 39.02 -71.64 REMARK 500 6 HIS A 13 2.21 -62.05 REMARK 500 6 LYS A 15 -99.08 -179.38 REMARK 500 6 GLN A 29 -19.11 -47.85 REMARK 500 6 ALA A 49 127.82 -174.99 REMARK 500 6 SER A 51 106.41 176.23 REMARK 500 7 HIS A 13 41.26 -61.54 REMARK 500 7 CYS A 14 -48.25 70.44 REMARK 500 7 LYS A 15 -69.07 -128.29 REMARK 500 7 GLN A 29 0.02 -66.30 REMARK 500 7 ALA A 49 142.08 -177.90 REMARK 500 7 VAL A 52 169.75 179.78 REMARK 500 8 CYS A 14 -145.37 90.82 REMARK 500 8 GLN A 29 31.08 -70.29 REMARK 500 8 TYR A 30 -3.00 -157.16 REMARK 500 8 SER A 37 89.93 -69.83 REMARK 500 REMARK 500 THIS ENTRY HAS 195 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 58 0.09 SIDE CHAIN REMARK 500 2 ARG A 58 0.15 SIDE CHAIN REMARK 500 5 ARG A 58 0.08 SIDE CHAIN REMARK 500 9 ARG A 41 0.09 SIDE CHAIN REMARK 500 9 ARG A 70 0.09 SIDE CHAIN REMARK 500 13 TYR A 47 0.09 SIDE CHAIN REMARK 500 14 ARG A 41 0.09 SIDE CHAIN REMARK 500 14 ARG A 70 0.16 SIDE CHAIN REMARK 500 17 ARG A 58 0.09 SIDE CHAIN REMARK 500 20 ARG A 58 0.09 SIDE CHAIN REMARK 500 20 ARG A 70 0.08 SIDE CHAIN REMARK 500 23 ARG A 58 0.08 SIDE CHAIN REMARK 500 25 ARG A 58 0.09 SIDE CHAIN REMARK 500 27 ARG A 58 0.14 SIDE CHAIN REMARK 500 27 ARG A 70 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CIRMMP50 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2GA7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE COPPER(I) FORM OF THE THIRD METAL-BINDING REMARK 900 DOMAIN OF ATP7A PROTEIN (MENKES DISEASE PROTEIN) DBREF 2G9O A 1 78 UNP Q04656 ATP7A_HUMAN 275 352 SEQADV 2G9O VAL A 46 UNP Q04656 LYS 320 ENGINEERED MUTATION SEQADV 2G9O ILE A 79 UNP Q04656 CLONING ARTIFACT SEQADV 2G9O GLU A 80 UNP Q04656 CLONING ARTIFACT SEQADV 2G9O GLY A 81 UNP Q04656 CLONING ARTIFACT SEQADV 2G9O ARG A 82 UNP Q04656 CLONING ARTIFACT SEQADV 2G9O LEU A 83 UNP Q04656 CLONING ARTIFACT SEQADV 2G9O GLU A 84 UNP Q04656 CLONING ARTIFACT SEQADV 2G9O HIS A 85 UNP Q04656 EXPRESSION TAG SEQADV 2G9O HIS A 86 UNP Q04656 EXPRESSION TAG SEQADV 2G9O HIS A 87 UNP Q04656 EXPRESSION TAG SEQADV 2G9O HIS A 88 UNP Q04656 EXPRESSION TAG SEQADV 2G9O HIS A 89 UNP Q04656 EXPRESSION TAG SEQADV 2G9O HIS A 90 UNP Q04656 EXPRESSION TAG SEQRES 1 A 90 ASN ASP SER THR ALA THR PHE ILE ILE ASP GLY MET HIS SEQRES 2 A 90 CYS LYS SER CYS VAL SER ASN ILE GLU SER THR LEU SER SEQRES 3 A 90 ALA LEU GLN TYR VAL SER SER ILE VAL VAL SER LEU GLU SEQRES 4 A 90 ASN ARG SER ALA ILE VAL VAL TYR ASN ALA SER SER VAL SEQRES 5 A 90 THR PRO GLU SER LEU ARG LYS ALA ILE GLU ALA VAL SER SEQRES 6 A 90 PRO GLY LEU TYR ARG VAL SER ILE THR SER GLU VAL GLU SEQRES 7 A 90 ILE GLU GLY ARG LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 HIS A 13 SER A 26 1 14 HELIX 2 2 PRO A 54 ALA A 63 1 10 SHEET 1 A 4 VAL A 31 SER A 37 0 SHEET 2 A 4 SER A 42 TYR A 47 -1 O ILE A 44 N VAL A 35 SHEET 3 A 4 SER A 3 ASP A 10 -1 N ALA A 5 O VAL A 45 SHEET 4 A 4 ARG A 70 SER A 72 -1 O SER A 72 N ILE A 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1
Complete list - t 20 2 Bytes