Header list of 2f05.pdb file
Complete list - r 9 2 Bytes
HEADER TRANSCRIPTION REPRESSOR 11-NOV-05 2F05
TITLE SOLUTION STRUCTURE OF FREE PAH2 DOMAIN OF MSIN3B
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PAIRED AMPHIPATHIC HELIX PROTEIN SIN3B;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: PAH2 DOMAIN (RESIDUES 148-252);
COMPND 5 SYNONYM: TRANSCRIPTIONAL COREPRESSOR SIN3B, HISTONE DEACETYLASE
COMPND 6 COMPLEX SUBUNIT SIN3B;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: SIN3B, KIAA0700;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T
KEYWDS 4 HELIX BUNDLE, TRANSCRIPTION REPRESSOR
EXPDTA SOLUTION NMR
NUMMDL 30
AUTHOR H.VAN INGEN,M.A.BALTUSSEN,J.AELEN,G.W.VUISTER
REVDAT 4 09-MAR-22 2F05 1 REMARK
REVDAT 3 24-FEB-09 2F05 1 VERSN
REVDAT 2 09-MAY-06 2F05 1 JRNL
REVDAT 1 28-MAR-06 2F05 0
JRNL AUTH H.VAN INGEN,M.A.BALTUSSEN,J.AELEN,G.W.VUISTER
JRNL TITL ROLE OF STRUCTURAL AND DYNAMICAL PLASTICITY IN SIN3: THE
JRNL TITL 2 FREE PAH2 DOMAIN IS A FOLDED MODULE IN MSIN3B
JRNL REF J.MOL.BIOL. V. 358 485 2006
JRNL REFN ISSN 0022-2836
JRNL PMID 16519900
JRNL DOI 10.1016/J.JMB.2006.01.100
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CYANA 1.05, X-PLOR
REMARK 3 AUTHORS : GUENTERT (CYANA), BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2F05 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-05.
REMARK 100 THE DEPOSITION ID IS D_1000035287.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293
REMARK 210 PH : 6.3
REMARK 210 IONIC STRENGTH : 150
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 0.9 MM PAH2 UNIFORM 13C/15N
REMARK 210 LABELED, H2O, 100MM KCL, 50 MM
REMARK 210 PI BUFFER PH 6.3
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : UNITY
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING, WITH WATER
REMARK 210 -REFINEMENT
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-30
REMARK 465 RES C SSSEQI
REMARK 465 SER A 86
REMARK 465 LEU A 87
REMARK 465 PHE A 88
REMARK 465 THR A 89
REMARK 465 GLY A 90
REMARK 465 ASN A 91
REMARK 465 GLY A 92
REMARK 465 SER A 93
REMARK 465 CYS A 94
REMARK 465 GLU A 95
REMARK 465 MET A 96
REMARK 465 ASN A 97
REMARK 465 SER A 98
REMARK 465 GLY A 99
REMARK 465 GLN A 100
REMARK 465 LYS A 101
REMARK 465 ASN A 102
REMARK 465 GLU A 103
REMARK 465 GLU A 104
REMARK 465 LYS A 105
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OE2 GLU A 41 HZ2 LYS A 46 1.59
REMARK 500 OE1 GLU A 55 HZ3 LYS A 84 1.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 PRO A 49 99.91 -64.97
REMARK 500 1 PRO A 81 94.65 -53.21
REMARK 500 2 SER A 2 -156.26 55.21
REMARK 500 2 HIS A 44 108.38 -49.46
REMARK 500 2 LYS A 46 87.79 -68.08
REMARK 500 2 GLU A 82 54.60 -108.25
REMARK 500 3 PHE A 50 78.07 -158.75
REMARK 500 3 MET A 53 97.86 -40.36
REMARK 500 3 PRO A 81 97.03 -51.75
REMARK 500 4 SER A 4 73.45 62.93
REMARK 500 4 LYS A 46 170.30 74.15
REMARK 500 4 PHE A 50 100.94 -47.50
REMARK 500 4 MET A 53 100.03 -53.49
REMARK 500 5 HIS A 44 78.96 59.99
REMARK 500 5 LYS A 46 88.47 60.72
REMARK 500 5 ARG A 51 133.13 72.06
REMARK 500 5 PHE A 66 39.25 -96.23
REMARK 500 5 ARG A 67 104.84 -59.93
REMARK 500 6 SER A 2 87.82 58.48
REMARK 500 6 SER A 4 67.24 -114.36
REMARK 500 6 PRO A 49 104.89 -56.85
REMARK 500 6 ARG A 51 42.23 -144.06
REMARK 500 6 PHE A 66 49.75 -99.85
REMARK 500 6 PRO A 81 10.73 -62.11
REMARK 500 6 GLU A 82 -82.91 -83.53
REMARK 500 7 THR A 45 81.13 -162.07
REMARK 500 7 LYS A 46 -165.64 52.83
REMARK 500 7 PHE A 50 154.24 75.22
REMARK 500 7 PHE A 66 49.82 -103.62
REMARK 500 7 ARG A 67 96.02 -67.94
REMARK 500 7 GLU A 82 63.13 -119.42
REMARK 500 8 ASP A 3 162.59 176.17
REMARK 500 8 LYS A 46 -175.53 58.32
REMARK 500 9 THR A 45 100.00 -160.51
REMARK 500 9 LYS A 46 -74.83 -57.92
REMARK 500 9 PRO A 49 99.72 -62.24
REMARK 500 10 SER A 2 -167.66 62.63
REMARK 500 10 HIS A 44 -55.43 -138.15
REMARK 500 10 THR A 45 -95.30 63.43
REMARK 500 10 LYS A 46 144.46 -179.45
REMARK 500 10 ARG A 51 68.94 -159.00
REMARK 500 10 PHE A 66 49.05 -100.51
REMARK 500 11 SER A 2 -164.98 -161.35
REMARK 500 11 MET A 53 109.86 -58.76
REMARK 500 11 PHE A 66 55.66 -108.31
REMARK 500 11 PRO A 81 54.30 -66.74
REMARK 500 12 LEU A 43 -80.02 -73.07
REMARK 500 12 HIS A 44 101.88 177.79
REMARK 500 12 LYS A 46 155.29 75.89
REMARK 500 12 PRO A 49 109.57 -52.90
REMARK 500
REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 5 ARG A 67 0.07 SIDE CHAIN
REMARK 500 11 ARG A 51 0.09 SIDE CHAIN
REMARK 500 25 ARG A 85 0.08 SIDE CHAIN
REMARK 500 30 ARG A 51 0.09 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 7315 RELATED DB: BMRB
REMARK 900 CHEMICAL SHIFT ASSIGNMENTS AND RELAXATIOND DATA
REMARK 900 RELATED ID: 1PD7 RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF MAD1-COMPLEX
DBREF 2F05 A 1 105 UNP Q62141 SIN3B_MOUSE 148 252
SEQRES 1 A 105 GLU SER ASP SER VAL GLU PHE ASN ASN ALA ILE SER TYR
SEQRES 2 A 105 VAL ASN LYS ILE LYS THR ARG PHE LEU ASP HIS PRO GLU
SEQRES 3 A 105 ILE TYR ARG SER PHE LEU GLU ILE LEU HIS THR TYR GLN
SEQRES 4 A 105 LYS GLU GLN LEU HIS THR LYS GLY ARG PRO PHE ARG GLY
SEQRES 5 A 105 MET SER GLU GLU GLU VAL PHE THR GLU VAL ALA ASN LEU
SEQRES 6 A 105 PHE ARG GLY GLN GLU ASP LEU LEU SER GLU PHE GLY GLN
SEQRES 7 A 105 PHE LEU PRO GLU ALA LYS ARG SER LEU PHE THR GLY ASN
SEQRES 8 A 105 GLY SER CYS GLU MET ASN SER GLY GLN LYS ASN GLU GLU
SEQRES 9 A 105 LYS
HELIX 1 1 SER A 4 PHE A 21 1 18
HELIX 2 2 HIS A 24 LEU A 43 1 20
HELIX 3 3 SER A 54 PHE A 66 1 13
HELIX 4 4 GLN A 69 LEU A 80 1 12
HELIX 5 5 PRO A 81 ARG A 85 5 5
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes