Header list of 2dgz.pdb file
Complete list - r 9 2 Bytes
HEADER DNA BINDING PROTEIN 16-MAR-06 2DGZ
TITLE SOLUTION STRUCTURE OF THE HELICASE AND RNASE D C-TERMINAL DOMAIN IN
TITLE 2 WERNER SYNDROME ATP-DEPENDENT HELICASE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: WERNER SYNDROME PROTEIN VARIANT;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: HELICASE AND RNASE D C-TERMINAL DOMAIN;
COMPND 5 SYNONYM: WERNER SYNDROME ATP-DEPENDENT HELICASE;
COMPND 6 EC: 3.6.1.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: WRN;
SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051212-13;
SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HRDC DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN
KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2DGZ 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2DGZ 1 VERSN
REVDAT 1 16-SEP-06 2DGZ 0
JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE HELICASE AND RNASE D C-TERMINAL
JRNL TITL 2 DOMAIN IN WERNER SYNDROME ATP-DEPENDENT HELICASE
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2DGZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-06.
REMARK 100 THE DEPOSITION ID IS D_1000025407.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 100MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM
REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 10%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.932, CYANA 2.0
REMARK 210 METHOD USED : TORSION ANGLE
REMARK 210 DYNAMICS,RESTRAINTED MOLECULAR
REMARK 210 DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH
REMARK 210 THE LOWEST ENERGY, STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ALA A1147 -34.93 -38.38
REMARK 500 1 GLN A1165 -70.23 -59.08
REMARK 500 1 LEU A1232 42.12 -81.37
REMARK 500 1 PRO A1238 -175.34 -69.74
REMARK 500 1 SER A1243 112.07 -166.05
REMARK 500 2 PRO A1143 -173.29 -69.74
REMARK 500 2 PRO A1175 -16.77 -47.98
REMARK 500 2 ILE A1201 102.09 -59.32
REMARK 500 2 ASP A1202 145.83 -31.46
REMARK 500 2 GLU A1206 129.61 -34.26
REMARK 500 2 LEU A1212 34.04 -92.08
REMARK 500 2 SER A1227 46.53 35.49
REMARK 500 2 LEU A1232 47.51 -80.93
REMARK 500 2 GLN A1239 96.69 -59.21
REMARK 500 3 SER A1141 124.08 -37.98
REMARK 500 3 PRO A1175 -17.23 -47.97
REMARK 500 3 ILE A1201 98.14 -55.42
REMARK 500 3 ASP A1202 143.64 -34.58
REMARK 500 3 LEU A1212 32.61 -87.28
REMARK 500 3 PRO A1214 -17.74 -47.97
REMARK 500 3 SER A1227 50.83 33.98
REMARK 500 3 LEU A1232 43.54 -85.49
REMARK 500 4 VAL A1144 168.35 -49.41
REMARK 500 4 PRO A1175 -16.76 -47.97
REMARK 500 4 LEU A1178 -70.09 -57.35
REMARK 500 4 GLU A1206 135.06 -38.86
REMARK 500 4 LEU A1212 35.53 -92.69
REMARK 500 4 PRO A1214 -17.08 -47.95
REMARK 500 4 SER A1227 51.03 34.90
REMARK 500 5 SER A1135 42.23 38.01
REMARK 500 5 SER A1141 115.16 -168.43
REMARK 500 5 GLN A1142 96.00 -32.50
REMARK 500 5 PRO A1175 -17.08 -47.96
REMARK 500 5 LEU A1212 32.26 -89.44
REMARK 500 5 PRO A1214 -18.16 -47.90
REMARK 500 5 SER A1227 51.53 33.70
REMARK 500 5 LEU A1232 44.97 -83.38
REMARK 500 5 LYS A1237 54.70 35.38
REMARK 500 5 PRO A1242 2.65 -69.81
REMARK 500 5 SER A1243 130.06 -35.22
REMARK 500 6 SER A1134 170.38 -55.39
REMARK 500 6 PRO A1143 -176.15 -69.74
REMARK 500 6 GLN A1165 -72.08 -89.24
REMARK 500 6 PRO A1175 -18.47 -47.95
REMARK 500 6 LEU A1212 34.52 -89.85
REMARK 500 6 PRO A1214 -17.15 -48.00
REMARK 500 6 SER A1227 46.48 34.23
REMARK 500 6 LEU A1232 40.60 -86.83
REMARK 500 7 PRO A1175 -16.64 -47.97
REMARK 500 7 ARG A1191 55.05 33.65
REMARK 500
REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSK003001883.1 RELATED DB: TARGETDB
DBREF 2DGZ A 1140 1239 UNP Q14191 WRN_HUMAN 1140 1239
SEQADV 2DGZ GLY A 1133 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ SER A 1134 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ SER A 1135 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ GLY A 1136 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ SER A 1137 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ SER A 1138 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ GLY A 1139 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ SER A 1240 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ GLY A 1241 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ PRO A 1242 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ SER A 1243 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ SER A 1244 UNP Q14191 CLONING ARTIFACT
SEQADV 2DGZ GLY A 1245 UNP Q14191 CLONING ARTIFACT
SEQRES 1 A 113 GLY SER SER GLY SER SER GLY SER SER GLN PRO VAL ILE
SEQRES 2 A 113 SER ALA GLN GLU GLN GLU THR GLN ILE VAL LEU TYR GLY
SEQRES 3 A 113 LYS LEU VAL GLU ALA ARG GLN LYS HIS ALA ASN LYS MET
SEQRES 4 A 113 ASP VAL PRO PRO ALA ILE LEU ALA THR ASN LYS ILE LEU
SEQRES 5 A 113 VAL ASP MET ALA LYS MET ARG PRO THR THR VAL GLU ASN
SEQRES 6 A 113 VAL LYS ARG ILE ASP GLY VAL SER GLU GLY LYS ALA ALA
SEQRES 7 A 113 MET LEU ALA PRO LEU TRP GLU VAL ILE LYS HIS PHE CYS
SEQRES 8 A 113 GLN THR ASN SER VAL GLN THR ASP LEU PHE SER SER THR
SEQRES 9 A 113 LYS PRO GLN SER GLY PRO SER SER GLY
HELIX 1 1 SER A 1146 MET A 1171 1 26
HELIX 2 2 PRO A 1174 ALA A 1179 1 6
HELIX 3 3 THR A 1180 ARG A 1191 1 12
HELIX 4 4 THR A 1194 ILE A 1201 1 8
HELIX 5 5 GLY A 1207 MET A 1211 5 5
HELIX 6 6 LEU A 1212 THR A 1225 1 14
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes