Header list of 2dgx.pdb file
Complete list - r 9 2 Bytes
HEADER RNA BINDING PROTEIN 16-MAR-06 2DGX
TITLE SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF IN KIAA0430 PROTEIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: KIAA0430 PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: KIAA0430;
SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050822-19;
SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN
KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2DGX 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2DGX 1 VERSN
REVDAT 1 16-SEP-06 2DGX 0
JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF IN KIAA0430
JRNL TITL 2 PROTEIN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2DGX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-06.
REMARK 100 THE DEPOSITION ID IS D_1000025405.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 100MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM
REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 90%
REMARK 210 H2O, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.932, CYANA 2.0
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS,
REMARK 210 RESTRAINTED MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH
REMARK 210 THE LOWEST ENERGY, STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 550 158.61 -48.12
REMARK 500 1 ASP A 563 96.49 -57.59
REMARK 500 1 LEU A 571 -61.85 -90.08
REMARK 500 1 GLN A 597 37.83 -86.81
REMARK 500 1 LYS A 621 87.37 -54.20
REMARK 500 2 ASP A 563 101.75 -58.42
REMARK 500 2 TYR A 596 -26.03 -39.55
REMARK 500 2 GLN A 597 37.41 -83.35
REMARK 500 2 LYS A 621 89.83 -53.21
REMARK 500 2 SER A 636 41.92 -94.37
REMARK 500 3 ASP A 563 94.91 -55.51
REMARK 500 3 HIS A 582 -62.88 -94.62
REMARK 500 3 GLN A 597 31.03 -88.66
REMARK 500 3 LYS A 621 88.96 -53.95
REMARK 500 4 ASP A 563 87.87 -49.77
REMARK 500 4 HIS A 582 -64.18 -91.95
REMARK 500 4 TYR A 596 -29.20 -39.94
REMARK 500 4 GLN A 597 37.36 -83.75
REMARK 500 4 HIS A 618 121.98 -38.44
REMARK 500 4 LYS A 621 94.29 -54.62
REMARK 500 5 SER A 550 41.09 35.99
REMARK 500 5 ASP A 563 88.37 -54.06
REMARK 500 5 HIS A 582 -66.80 -94.05
REMARK 500 5 THR A 594 36.33 -93.97
REMARK 500 5 TYR A 596 -29.34 -38.48
REMARK 500 5 GLN A 597 35.40 -83.76
REMARK 500 5 LYS A 621 91.04 -47.29
REMARK 500 5 SER A 640 -60.70 -94.07
REMARK 500 6 SER A 551 -58.54 -130.21
REMARK 500 6 ASN A 553 104.60 -44.92
REMARK 500 6 ASP A 563 101.40 -48.04
REMARK 500 6 LEU A 566 165.77 -45.59
REMARK 500 6 LYS A 621 88.33 -52.76
REMARK 500 6 THR A 633 97.37 -58.94
REMARK 500 6 SER A 636 42.37 -106.41
REMARK 500 6 PRO A 638 89.15 -69.77
REMARK 500 7 GLN A 597 38.71 -82.68
REMARK 500 7 LYS A 621 88.92 -53.13
REMARK 500 7 THR A 633 174.91 -55.49
REMARK 500 7 ALA A 635 142.25 -174.02
REMARK 500 8 SER A 548 95.78 -52.42
REMARK 500 8 SER A 551 -60.31 -105.56
REMARK 500 8 ASP A 563 85.70 -61.87
REMARK 500 8 HIS A 582 -70.33 -87.58
REMARK 500 8 TYR A 596 -28.76 -39.74
REMARK 500 8 GLN A 597 38.36 -82.77
REMARK 500 8 HIS A 618 122.03 -36.73
REMARK 500 8 LYS A 621 90.79 -56.47
REMARK 500 9 SER A 548 130.73 -173.02
REMARK 500 9 ASP A 563 92.49 -62.77
REMARK 500
REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSK002100419.1 RELATED DB: TARGETDB
DBREF 2DGX A 553 635 UNP Q9Y4J9 Q9Y4J9_HUMAN 227 309
SEQADV 2DGX GLY A 546 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX SER A 547 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX SER A 548 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX GLY A 549 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX SER A 550 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX SER A 551 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX GLY A 552 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX SER A 636 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX GLY A 637 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX PRO A 638 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX SER A 639 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX SER A 640 UNP Q9Y4J9 CLONING ARTIFACT
SEQADV 2DGX GLY A 641 UNP Q9Y4J9 CLONING ARTIFACT
SEQRES 1 A 96 GLY SER SER GLY SER SER GLY ASN GLY ALA ASP VAL GLN
SEQRES 2 A 96 VAL SER ASN ILE ASP TYR ARG LEU SER ARG LYS GLU LEU
SEQRES 3 A 96 GLN GLN LEU LEU GLN GLU ALA PHE ALA ARG HIS GLY LYS
SEQRES 4 A 96 VAL LYS SER VAL GLU LEU SER PRO HIS THR ASP TYR GLN
SEQRES 5 A 96 LEU LYS ALA VAL VAL GLN MET GLU ASN LEU GLN ASP ALA
SEQRES 6 A 96 ILE GLY ALA VAL ASN SER LEU HIS ARG TYR LYS ILE GLY
SEQRES 7 A 96 SER LYS LYS ILE LEU VAL SER LEU ALA THR GLY ALA SER
SEQRES 8 A 96 GLY PRO SER SER GLY
HELIX 1 1 SER A 567 GLY A 583 1 17
HELIX 2 2 ASN A 606 HIS A 618 1 13
SHEET 1 A 5 VAL A 585 LEU A 590 0
SHEET 2 A 5 ALA A 600 MET A 604 -1 O GLN A 603 N LYS A 586
SHEET 3 A 5 ALA A 555 SER A 560 -1 N VAL A 559 O ALA A 600
SHEET 4 A 5 LYS A 625 LEU A 631 -1 O LEU A 628 N SER A 560
SHEET 5 A 5 TYR A 620 ILE A 622 -1 N ILE A 622 O LYS A 625
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes