Header list of 2dgt.pdb file
Complete list - r 9 2 Bytes
HEADER RNA BINDING PROTEIN 15-MAR-06 2DGT
TITLE SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN IN RNA-BINDING
TITLE 2 PROTEIN 30
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RNA-BINDING PROTEIN 30;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF;
COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 30, RNA-BINDING MOTIF PROTEIN 4B;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: RBM30;
SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051017-04;
SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN
KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2DGT 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2DGT 1 VERSN
REVDAT 1 15-SEP-06 2DGT 0
JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN IN
JRNL TITL 2 RNA-BINDING PROTEIN 30
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2DGT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-06.
REMARK 100 THE DEPOSITION ID IS D_1000025401.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 100MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM
REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 10%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.932, CYANA 2.0
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS,
REMARK 210 RESTRAINTED MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH
REMARK 210 THE LOWEST ENERGY, STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 72 98.94 -69.70
REMARK 500 1 ALA A 76 -65.69 -100.01
REMARK 500 1 PRO A 103 88.97 -69.86
REMARK 500 1 ILE A 105 -61.13 -99.91
REMARK 500 1 LYS A 111 -75.38 -36.27
REMARK 500 1 GLU A 135 99.85 -53.45
REMARK 500 1 SER A 158 -44.75 -132.22
REMARK 500 2 SER A 69 42.40 35.38
REMARK 500 2 SER A 73 42.29 -100.47
REMARK 500 2 SER A 77 175.19 -47.40
REMARK 500 2 PRO A 103 90.06 -69.78
REMARK 500 2 LYS A 111 -74.97 -35.21
REMARK 500 2 GLU A 135 99.67 -53.13
REMARK 500 3 SER A 72 83.76 -69.95
REMARK 500 3 PRO A 103 85.51 -69.72
REMARK 500 3 LYS A 111 -75.31 -34.19
REMARK 500 3 GLU A 119 -61.77 -92.89
REMARK 500 3 GLU A 135 103.66 -52.42
REMARK 500 3 ARG A 151 142.50 -36.29
REMARK 500 4 SER A 70 -54.38 -125.56
REMARK 500 4 LYS A 75 101.93 -47.82
REMARK 500 4 SER A 77 177.73 -59.05
REMARK 500 4 PRO A 103 92.55 -69.70
REMARK 500 4 LYS A 111 -75.12 -33.74
REMARK 500 4 GLU A 135 102.47 -50.12
REMARK 500 4 PRO A 156 85.24 -69.72
REMARK 500 5 SER A 73 175.11 -58.42
REMARK 500 5 PRO A 103 83.38 -69.80
REMARK 500 5 LYS A 111 -71.07 -35.87
REMARK 500 5 GLU A 119 -61.03 -92.02
REMARK 500 5 GLU A 135 102.22 -54.83
REMARK 500 5 SER A 154 136.18 -39.74
REMARK 500 6 SER A 70 117.18 -167.22
REMARK 500 6 SER A 77 -177.18 -170.29
REMARK 500 6 PRO A 103 80.99 -69.81
REMARK 500 6 VAL A 104 152.31 -46.79
REMARK 500 6 LYS A 111 -75.20 -34.08
REMARK 500 6 ARG A 129 -18.34 -49.66
REMARK 500 6 SER A 146 42.78 -97.66
REMARK 500 6 ARG A 151 153.63 -40.30
REMARK 500 6 SER A 154 104.03 -57.07
REMARK 500 7 SER A 73 44.59 -82.44
REMARK 500 7 SER A 77 -178.73 -175.01
REMARK 500 7 PRO A 103 88.11 -69.79
REMARK 500 7 LYS A 111 -75.20 -38.43
REMARK 500 7 GLU A 119 -61.65 -92.80
REMARK 500 7 GLU A 135 97.85 -59.89
REMARK 500 7 ALA A 153 119.49 -171.66
REMARK 500 8 SER A 77 171.50 -46.68
REMARK 500 8 PRO A 103 83.67 -69.77
REMARK 500
REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSI002005506.1 RELATED DB: TARGETDB
DBREF 2DGT A 75 153 UNP Q9BQ04 RBM4B_HUMAN 75 155
SEQADV 2DGT GLY A 68 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT SER A 69 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT SER A 70 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT GLY A 71 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT SER A 72 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT SER A 73 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT GLY A 74 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT SER A 154 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT GLY A 155 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT PRO A 156 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT SER A 157 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT SER A 158 UNP Q9BQ04 CLONING ARTIFACT
SEQADV 2DGT GLY A 159 UNP Q9BQ04 CLONING ARTIFACT
SEQRES 1 A 92 GLY SER SER GLY SER SER GLY LYS ALA SER THR LYS LEU
SEQRES 2 A 92 HIS VAL GLY ASN ILE SER PRO THR CYS THR ASN GLN GLU
SEQRES 3 A 92 LEU ARG ALA LYS PHE GLU GLU TYR GLY PRO VAL ILE GLU
SEQRES 4 A 92 CYS ASP ILE VAL LYS ASP TYR ALA PHE VAL HIS MET GLU
SEQRES 5 A 92 ARG ALA GLU ASP ALA VAL GLU ALA ILE ARG GLY LEU ASP
SEQRES 6 A 92 ASN THR GLU PHE GLN GLY LYS ARG MET HIS VAL GLN LEU
SEQRES 7 A 92 SER THR SER ARG LEU ARG THR ALA SER GLY PRO SER SER
SEQRES 8 A 92 GLY
HELIX 1 1 THR A 90 GLU A 100 1 11
HELIX 2 2 ARG A 120 ASP A 132 1 13
SHEET 1 A 5 GLU A 106 ILE A 109 0
SHEET 2 A 5 TYR A 113 MET A 118 -1 O HIS A 117 N GLU A 106
SHEET 3 A 5 THR A 78 GLY A 83 -1 N LEU A 80 O VAL A 116
SHEET 4 A 5 LYS A 139 LEU A 145 -1 O GLN A 144 N HIS A 81
SHEET 5 A 5 THR A 134 PHE A 136 -1 N PHE A 136 O LYS A 139
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes