Header list of 2dgo.pdb file
Complete list - r 9 2 Bytes
HEADER RNA BINDING PROTEIN 15-MAR-06 2DGO
TITLE SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN CYTOTOXIC GRANULE-
TITLE 2 ASSOCIATED RNA BINDING PROTEIN 1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYTOTOXIC GRANULE-ASSOCIATED RNA BINDING PROTEIN 1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: TIA1;
SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050425-20;
SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN
KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2DGO 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2DGO 1 VERSN
REVDAT 1 15-SEP-06 2DGO 0
JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN CYTOTOXIC
JRNL TITL 2 GRANULE-ASSOCIATED RNA BINDING PROTEIN 1
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2DGO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-06.
REMARK 100 THE DEPOSITION ID IS D_1000025396.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 100MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM
REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 10%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.932, CYANA 2.0
REMARK 210 METHOD USED : TORSION ANGLE
REMARK 210 DYNAMICS,RESTRAINTED MOLECULAR
REMARK 210 DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH
REMARK 210 THE LOWEST ENERGY,STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 65 106.41 -52.24
REMARK 500 1 GLN A 70 91.77 -57.18
REMARK 500 1 ASP A 73 73.91 -115.10
REMARK 500 1 THR A 74 45.43 36.63
REMARK 500 1 ASN A 76 50.13 -98.72
REMARK 500 1 SER A 105 -64.53 -103.28
REMARK 500 1 ILE A 136 -34.45 -38.60
REMARK 500 2 THR A 74 46.58 -104.39
REMARK 500 2 ASN A 76 47.44 -104.98
REMARK 500 2 SER A 105 -63.73 -109.68
REMARK 500 2 SER A 118 105.64 -51.80
REMARK 500 2 PRO A 159 -176.29 -69.77
REMARK 500 2 TYR A 165 143.02 -173.79
REMARK 500 3 ASP A 73 43.75 -107.05
REMARK 500 3 THR A 74 45.30 35.80
REMARK 500 3 ASN A 76 54.65 -109.03
REMARK 500 3 SER A 105 -61.83 -107.33
REMARK 500 3 ASP A 131 -39.11 -35.80
REMARK 500 3 ILE A 136 -36.40 -38.76
REMARK 500 3 GLU A 166 145.51 -171.94
REMARK 500 4 ASN A 76 51.96 -113.02
REMARK 500 4 SER A 105 -62.91 -106.73
REMARK 500 4 ALA A 154 41.58 -85.67
REMARK 500 4 LYS A 162 108.36 -37.43
REMARK 500 4 SER A 175 122.61 -170.60
REMARK 500 5 LYS A 72 43.21 -96.33
REMARK 500 5 PRO A 161 93.99 -69.75
REMARK 500 5 SER A 167 43.04 -107.27
REMARK 500 6 SER A 65 -61.70 -90.38
REMARK 500 6 LYS A 72 133.89 -174.93
REMARK 500 6 THR A 74 53.26 35.22
REMARK 500 6 ASN A 76 50.38 -110.33
REMARK 500 6 SER A 118 109.03 -51.77
REMARK 500 6 ASN A 168 129.24 -173.65
REMARK 500 7 SER A 64 42.16 34.60
REMARK 500 7 GLN A 70 170.03 -50.78
REMARK 500 7 SER A 105 -60.76 -109.86
REMARK 500 7 ILE A 136 -35.32 -37.76
REMARK 500 7 GLN A 142 -177.26 -56.64
REMARK 500 7 ASN A 168 170.61 -59.27
REMARK 500 8 SER A 65 115.89 -36.71
REMARK 500 8 SER A 105 -61.98 -102.50
REMARK 500 8 GLN A 142 179.88 -55.01
REMARK 500 8 PRO A 161 98.26 -69.76
REMARK 500 9 THR A 74 39.72 -90.93
REMARK 500 9 SER A 118 102.09 -54.92
REMARK 500 9 ASN A 168 118.82 -165.88
REMARK 500 10 SER A 67 -50.51 -123.45
REMARK 500 10 LYS A 72 49.40 -80.19
REMARK 500 10 ASP A 73 33.99 -94.91
REMARK 500
REMARK 500 THIS ENTRY HAS 124 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT008000372.1 RELATED DB: TARGETDB
DBREF 2DGO A 70 171 UNP P52912 TIA1_MOUSE 105 199
SEQADV 2DGO GLY A 63 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO SER A 64 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO SER A 65 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO GLY A 66 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO SER A 67 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO SER A 68 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO GLY A 69 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO SER A 172 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO GLY A 173 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO PRO A 174 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO SER A 175 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO SER A 176 UNP P52912 CLONING ARTIFACT
SEQADV 2DGO GLY A 177 UNP P52912 CLONING ARTIFACT
SEQRES 1 A 115 GLY SER SER GLY SER SER GLY GLN LYS LYS ASP THR SER
SEQRES 2 A 115 ASN HIS PHE HIS VAL PHE VAL GLY ASP LEU SER PRO GLU
SEQRES 3 A 115 ILE THR THR GLU ASP ILE LYS ALA ALA PHE ALA PRO PHE
SEQRES 4 A 115 GLY ARG ILE SER ASP ALA ARG VAL VAL LYS ASP MET ALA
SEQRES 5 A 115 THR GLY LYS SER LYS GLY TYR GLY PHE VAL SER PHE PHE
SEQRES 6 A 115 ASN LYS TRP ASP ALA GLU ASN ALA ILE GLN GLN MET GLY
SEQRES 7 A 115 GLY GLN TRP LEU GLY GLY ARG GLN ILE ARG THR ASN TRP
SEQRES 8 A 115 ALA THR ARG LYS PRO PRO ALA PRO LYS SER THR TYR GLU
SEQRES 9 A 115 SER ASN THR LYS GLN SER GLY PRO SER SER GLY
HELIX 1 1 THR A 90 ALA A 99 1 10
HELIX 2 2 PRO A 100 GLY A 102 5 3
HELIX 3 3 ASN A 128 MET A 139 1 12
SHEET 1 A 4 ILE A 104 LYS A 111 0
SHEET 2 A 4 SER A 118 PHE A 126 -1 O SER A 125 N ASP A 106
SHEET 3 A 4 PHE A 78 GLY A 83 -1 N VAL A 82 O GLY A 122
SHEET 4 A 4 ARG A 150 TRP A 153 -1 O ASN A 152 N PHE A 81
SHEET 1 B 2 TRP A 143 LEU A 144 0
SHEET 2 B 2 ARG A 147 GLN A 148 -1 O ARG A 147 N LEU A 144
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes