Header list of 2db1.pdb file
Complete list - r 9 2 Bytes
HEADER RNA BINDING PROTEIN 14-DEC-05 2DB1
TITLE SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN HETEROGENEOUS NUCLEAR
TITLE 2 RIBONUCLEOPROTEIN F HOMOLOG
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN F;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: HNRNP F;
SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050425-12;
SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN
KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2DB1 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2DB1 1 VERSN
REVDAT 1 14-JUN-06 2DB1 0
JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN
JRNL TITL 2 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN F HOMOLOG
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2DB1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05.
REMARK 100 THE DEPOSITION ID IS D_1000025202.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 100MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0), 100MM
REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 90%
REMARK 210 H2O, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.93191, CYANA 2.0
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS,
REMARK 210 RESTRAINTED MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH
REMARK 210 THE LOWEST ENERGY, STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLU A 6 112.48 -34.54
REMARK 500 1 LEU A 31 39.83 -95.66
REMARK 500 1 ASP A 33 -19.03 -49.19
REMARK 500 1 ALA A 57 118.53 -160.13
REMARK 500 1 ARG A 75 38.87 31.49
REMARK 500 1 THR A 91 -26.90 -39.58
REMARK 500 1 SER A 100 -57.12 -134.66
REMARK 500 1 SER A 110 150.23 -44.74
REMARK 500 2 SER A -4 46.85 -83.92
REMARK 500 2 MET A 2 41.09 72.63
REMARK 500 2 GLU A 6 76.90 -65.94
REMARK 500 2 THR A 35 73.18 -110.54
REMARK 500 2 LYS A 98 -30.14 -39.38
REMARK 500 2 SER A 100 -53.84 -123.32
REMARK 500 2 PRO A 102 2.73 -69.77
REMARK 500 2 SER A 106 88.31 -69.82
REMARK 500 3 MET A 2 41.52 -89.82
REMARK 500 3 GLU A 6 98.59 -54.50
REMARK 500 3 LEU A 31 39.34 -97.20
REMARK 500 3 ASP A 33 -19.93 -49.31
REMARK 500 3 ASP A 65 -37.81 -38.01
REMARK 500 3 SER A 100 -57.56 -131.76
REMARK 500 3 PRO A 102 0.30 -69.75
REMARK 500 3 ALA A 105 -63.59 -98.59
REMARK 500 3 SER A 109 98.87 -48.69
REMARK 500 4 MET A 1 88.63 -59.82
REMARK 500 4 MET A 2 -69.94 -99.72
REMARK 500 4 LEU A 3 31.86 -99.57
REMARK 500 4 PRO A 5 -163.67 -69.74
REMARK 500 4 GLU A 9 172.78 -47.60
REMARK 500 4 LEU A 31 41.73 -105.79
REMARK 500 4 THR A 35 72.34 -106.90
REMARK 500 4 GLN A 53 95.50 -66.07
REMARK 500 4 ARG A 75 34.50 33.33
REMARK 500 5 LEU A 3 109.48 -50.36
REMARK 500 5 PRO A 5 -178.17 -69.75
REMARK 500 5 LEU A 31 38.33 -94.91
REMARK 500 5 GLN A 53 97.83 -62.32
REMARK 500 5 ARG A 75 44.88 31.15
REMARK 500 5 PRO A 102 2.83 -69.76
REMARK 500 5 SER A 106 47.08 -82.89
REMARK 500 5 PRO A 108 85.17 -69.79
REMARK 500 6 PRO A 5 98.12 -69.76
REMARK 500 6 LEU A 31 37.50 -91.64
REMARK 500 6 SER A 100 -58.94 -127.27
REMARK 500 6 PRO A 108 89.00 -69.80
REMARK 500 6 SER A 110 159.53 -48.06
REMARK 500 7 SER A -4 42.76 -91.11
REMARK 500 7 SER A -1 93.94 -67.63
REMARK 500 7 PRO A 5 -174.46 -69.75
REMARK 500
REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT008001147.1 RELATED DB: TARGETDB
DBREF 2DB1 A 1 105 UNP Q9Z2X1 Q9Z2X1_MOUSE 1 105
SEQADV 2DB1 GLY A -6 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 SER A -5 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 SER A -4 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 GLY A -3 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 SER A -2 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 SER A -1 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 GLY A 0 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 SER A 106 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 GLY A 107 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 PRO A 108 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 SER A 109 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 SER A 110 UNP Q9Z2X1 CLONING ARTIFACT
SEQADV 2DB1 GLY A 111 UNP Q9Z2X1 CLONING ARTIFACT
SEQRES 1 A 118 GLY SER SER GLY SER SER GLY MET MET LEU GLY PRO GLU
SEQRES 2 A 118 GLY GLY GLU GLY TYR VAL VAL LYS LEU ARG GLY LEU PRO
SEQRES 3 A 118 TRP SER CYS SER ILE GLU ASP VAL GLN ASN PHE LEU SER
SEQRES 4 A 118 ASP CYS THR ILE HIS ASP GLY VAL ALA GLY VAL HIS PHE
SEQRES 5 A 118 ILE TYR THR ARG GLU GLY ARG GLN SER GLY GLU ALA PHE
SEQRES 6 A 118 VAL GLU LEU GLU SER GLU ASP ASP VAL LYS LEU ALA LEU
SEQRES 7 A 118 LYS LYS ASP ARG GLU SER MET GLY HIS ARG TYR ILE GLU
SEQRES 8 A 118 VAL PHE LYS SER HIS ARG THR GLU MET ASP TRP VAL LEU
SEQRES 9 A 118 LYS HIS SER GLY PRO ASN SER ALA SER GLY PRO SER SER
SEQRES 10 A 118 GLY
HELIX 1 1 SER A 23 LEU A 31 1 9
HELIX 2 2 ASP A 38 ALA A 41 5 4
HELIX 3 3 SER A 63 LEU A 71 1 9
HELIX 4 4 LYS A 72 ASP A 74 5 3
HELIX 5 5 HIS A 89 HIS A 99 1 11
SHEET 1 A 5 VAL A 43 TYR A 47 0
SHEET 2 A 5 GLN A 53 GLU A 60 -1 O GLU A 56 N ILE A 46
SHEET 3 A 5 VAL A 12 ARG A 16 -1 N LEU A 15 O ALA A 57
SHEET 4 A 5 ARG A 81 SER A 88 -1 O PHE A 86 N LYS A 14
SHEET 5 A 5 GLU A 76 MET A 78 -1 N GLU A 76 O ILE A 83
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes