Header list of 2da0.pdb file
Complete list - r 9 2 Bytes
HEADER SIGNALING PROTEIN 13-DEC-05 2DA0
TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF PIP2-DEPENDENT ARF1 GTPASE-
TITLE 2 ACTIVATING PROTEIN FROM HUMAN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 130-KDA PHOSPHATIDYLINOSITOL 4,5-BIPHOSPHATE-DEPENDENT ARF1
COMPND 3 GTPASE-ACTIVATING PROTEIN;
COMPND 4 CHAIN: A;
COMPND 5 FRAGMENT: PH DOMAIN;
COMPND 6 SYNONYM: PIP2-DEPENDENT ARF1 GAP, ADP-RIBOSYLATION FACTOR-DIRECTED
COMPND 7 GTPASE-ACTIVATING PROTEIN 1, ARF GTPASE-ACTIVATING PROTEIN 1,
COMPND 8 DEVELOPMENT AND DIFFERENTIATION-ENHANCING FACTOR 1;
COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ASAP1;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050801-06;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PH DOMAIN, ARF GTPASE-ACTIVATING PROTEIN 1, STRUCTURAL GENOMICS,
KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL
KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI,
KEYWDS 4 SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2DA0 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2DA0 1 VERSN
REVDAT 1 13-JUN-06 2DA0 0
JRNL AUTH H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF PIP2-DEPENDENT ARF1
JRNL TITL 2 GTPASE-ACTIVATING PROTEIN FROM HUMAN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2DA0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-05.
REMARK 100 THE DEPOSITION ID IS D_1000025171.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 296
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.18MM PH DOMAIN U-15N,13C; 20MM
REMARK 210 D-TRIS-HCL(PH 7.0); 100MM NACL;
REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O,
REMARK 210 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.932, CYANA 2.0.17
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH
REMARK 210 THE LEAST RESTRAINT VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 10 37.11 -92.18
REMARK 500 1 SER A 20 168.80 -45.47
REMARK 500 1 PRO A 50 -176.31 -69.79
REMARK 500 1 ASN A 63 157.94 -38.83
REMARK 500 1 GLU A 65 -56.04 -122.19
REMARK 500 1 ASP A 66 83.64 -56.15
REMARK 500 1 HIS A 75 107.61 -46.85
REMARK 500 1 VAL A 95 -70.33 -72.02
REMARK 500 2 SER A 3 127.22 -39.30
REMARK 500 2 ASP A 21 162.56 -46.39
REMARK 500 2 SER A 46 93.55 -35.50
REMARK 500 2 PRO A 50 -176.89 -69.79
REMARK 500 2 ASN A 63 174.54 -47.77
REMARK 500 2 LYS A 67 178.41 -50.85
REMARK 500 2 SER A 69 115.77 -173.27
REMARK 500 2 VAL A 95 -70.94 -71.17
REMARK 500 2 THR A 105 -27.64 -39.97
REMARK 500 2 ALA A 107 139.76 -33.40
REMARK 500 3 SER A 2 158.03 -46.47
REMARK 500 3 SER A 3 42.71 -82.14
REMARK 500 3 ASN A 63 -176.63 -55.24
REMARK 500 3 ALA A 64 -44.07 -131.52
REMARK 500 3 LYS A 68 58.48 -117.29
REMARK 500 3 SER A 113 115.85 -37.74
REMARK 500 4 SER A 20 96.34 -68.99
REMARK 500 4 LYS A 25 96.42 -64.78
REMARK 500 4 HIS A 43 -51.13 -131.67
REMARK 500 4 SER A 46 39.59 -91.10
REMARK 500 4 ARG A 48 -71.33 -119.56
REMARK 500 4 GLN A 49 139.76 -173.71
REMARK 500 4 PRO A 50 -167.04 -69.81
REMARK 500 4 LYS A 68 40.17 34.51
REMARK 500 4 HIS A 75 105.03 -43.23
REMARK 500 4 ASN A 76 39.58 36.17
REMARK 500 4 GLU A 102 -19.88 -48.81
REMARK 500 4 PHE A 108 50.27 38.85
REMARK 500 4 PRO A 111 2.27 -69.80
REMARK 500 5 ILE A 23 -58.76 -126.77
REMARK 500 5 ALA A 44 -73.41 -124.51
REMARK 500 5 ASN A 63 157.05 -46.36
REMARK 500 5 HIS A 75 102.22 -45.12
REMARK 500 5 VAL A 95 -70.53 -71.03
REMARK 500 5 PHE A 108 106.17 -45.29
REMARK 500 6 SER A 6 156.84 -43.37
REMARK 500 6 ASP A 21 149.52 -34.53
REMARK 500 6 LYS A 25 34.23 -84.67
REMARK 500 6 HIS A 43 149.81 -172.70
REMARK 500 6 ALA A 44 48.87 34.21
REMARK 500 6 THR A 45 92.65 -68.12
REMARK 500 6 HIS A 75 103.03 -40.07
REMARK 500
REMARK 500 THIS ENTRY HAS 162 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSK002001223.1 RELATED DB: TARGETDB
DBREF 2DA0 A 8 108 UNP Q9ULH1 DDEF1_HUMAN 150 250
SEQADV 2DA0 GLY A 1 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 SER A 2 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 SER A 3 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 GLY A 4 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 SER A 5 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 SER A 6 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 GLY A 7 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 SER A 109 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 GLY A 110 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 PRO A 111 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 SER A 112 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 SER A 113 UNP Q9ULH1 CLONING ARTIFACT
SEQADV 2DA0 GLY A 114 UNP Q9ULH1 CLONING ARTIFACT
SEQRES 1 A 114 GLY SER SER GLY SER SER GLY TYR GLY SER GLU LYS LYS
SEQRES 2 A 114 GLY TYR LEU LEU LYS LYS SER ASP GLY ILE ARG LYS VAL
SEQRES 3 A 114 TRP GLN ARG ARG LYS CYS SER VAL LYS ASN GLY ILE LEU
SEQRES 4 A 114 THR ILE SER HIS ALA THR SER ASN ARG GLN PRO ALA LYS
SEQRES 5 A 114 LEU ASN LEU LEU THR CYS GLN VAL LYS PRO ASN ALA GLU
SEQRES 6 A 114 ASP LYS LYS SER PHE ASP LEU ILE SER HIS ASN ARG THR
SEQRES 7 A 114 TYR HIS PHE GLN ALA GLU ASP GLU GLN ASP TYR VAL ALA
SEQRES 8 A 114 TRP ILE SER VAL LEU THR ASN SER LYS GLU GLU ALA LEU
SEQRES 9 A 114 THR MET ALA PHE SER GLY PRO SER SER GLY
HELIX 1 1 GLU A 86 THR A 105 1 20
SHEET 1 A 7 ALA A 51 ASN A 54 0
SHEET 2 A 7 ILE A 38 ILE A 41 -1 N LEU A 39 O LEU A 53
SHEET 3 A 7 TRP A 27 LYS A 35 -1 N SER A 33 O THR A 40
SHEET 4 A 7 LYS A 12 LYS A 19 -1 N LEU A 16 O ARG A 30
SHEET 5 A 7 ARG A 77 GLN A 82 -1 O GLN A 82 N LEU A 17
SHEET 6 A 7 PHE A 70 SER A 74 -1 N SER A 74 O ARG A 77
SHEET 7 A 7 GLN A 59 PRO A 62 -1 N LYS A 61 O ASP A 71
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes