Header list of 2d9v.pdb file
Complete list - r 9 2 Bytes
HEADER MEMBRANE PROTEIN 13-DEC-05 2D9V
TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN HOMOLOGY DOMAIN-
TITLE 2 CONTAINING PROTEIN FAMILY B MEMBER 1 FROM MOUSE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING PROTEIN FAMILY B
COMPND 3 MEMBER 1;
COMPND 4 CHAIN: A;
COMPND 5 FRAGMENT: PH DOMAIN;
COMPND 6 SYNONYM: PLECKSTRIN HOMOLOGY DOMAIN RETINAL PROTEIN 1, PH DOMAIN
COMPND 7 CONTAINING PROTEIN IN RETINA 1, PHRET1;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: PHR1;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050302-02;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PH DOMAIN, PHRET1, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON
KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, MEMBRANE PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2D9V 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2D9V 1 VERSN
REVDAT 1 13-JUN-06 2D9V 0
JRNL AUTH H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN HOMOLOGY
JRNL TITL 2 DOMAIN-CONTAINING PROTEIN FAMILY B MEMBER 1 FROM MOUSE
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2D9V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05.
REMARK 100 THE DEPOSITION ID IS D_1000025166.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 296
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.12MM PH DOMAIN U-15N, 13C;
REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM
REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90%
REMARK 210 H2O,10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.932, CYANA 2.0.17
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH
REMARK 210 THE LEAST RESTRAINT VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ASP A 47 79.13 -117.93
REMARK 500 1 PHE A 56 47.40 37.05
REMARK 500 1 CYS A 67 151.07 -41.53
REMARK 500 1 GLN A 68 -41.47 -130.93
REMARK 500 1 PRO A 73 -165.77 -69.78
REMARK 500 1 ARG A 76 176.98 -48.09
REMARK 500 1 LEU A 81 151.93 -36.74
REMARK 500 1 PRO A 118 2.81 -69.76
REMARK 500 1 ALA A 119 110.85 -34.14
REMARK 500 1 PRO A 124 2.75 -69.76
REMARK 500 1 SER A 125 131.84 -34.61
REMARK 500 1 SER A 128 -55.05 -129.69
REMARK 500 2 ARG A 22 37.70 34.58
REMARK 500 2 ALA A 45 40.36 -82.14
REMARK 500 2 ASP A 47 42.16 -90.59
REMARK 500 2 GLU A 48 114.76 -37.55
REMARK 500 2 PHE A 56 42.74 36.82
REMARK 500 2 GLN A 68 -63.25 -120.19
REMARK 500 2 PRO A 73 -172.94 -69.78
REMARK 500 2 LEU A 81 142.51 -37.82
REMARK 500 2 PRO A 118 2.78 -69.71
REMARK 500 2 SER A 128 48.44 -90.53
REMARK 500 3 SER A 3 -54.31 -122.79
REMARK 500 3 SER A 6 106.39 -170.77
REMARK 500 3 ARG A 22 41.04 34.44
REMARK 500 3 THR A 44 98.81 -67.16
REMARK 500 3 ALA A 45 44.67 -82.40
REMARK 500 3 ASP A 47 43.72 -87.85
REMARK 500 3 GLU A 48 102.83 -35.81
REMARK 500 3 PHE A 56 47.03 38.32
REMARK 500 3 GLU A 66 -33.74 -34.76
REMARK 500 3 CYS A 67 167.11 -45.41
REMARK 500 3 GLN A 68 -53.78 -132.66
REMARK 500 3 GLU A 74 120.61 -37.57
REMARK 500 3 ARG A 76 173.56 -52.72
REMARK 500 3 SER A 90 139.22 -174.64
REMARK 500 3 THR A 115 105.04 -165.71
REMARK 500 3 PRO A 116 -177.98 -69.85
REMARK 500 4 SER A 6 -176.93 -54.06
REMARK 500 4 VAL A 9 -61.64 -91.29
REMARK 500 4 GLU A 43 -27.12 -39.88
REMARK 500 4 THR A 44 97.62 -67.56
REMARK 500 4 ASP A 47 45.18 -103.93
REMARK 500 4 GLU A 48 106.96 -49.94
REMARK 500 4 PHE A 56 47.98 35.00
REMARK 500 4 ARG A 76 -178.98 -64.86
REMARK 500 4 LEU A 81 151.78 -46.24
REMARK 500 4 LEU A 82 110.78 -166.23
REMARK 500 5 VAL A 9 -60.75 -99.58
REMARK 500 5 SER A 18 177.65 -56.92
REMARK 500
REMARK 500 THIS ENTRY HAS 216 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700
REMARK 700 SHEET
REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMI002018667.1 RELATED DB: TARGETDB
DBREF 2D9V A 8 124 UNP Q9QYE9 PLEB1_MOUSE 22 138
SEQADV 2D9V GLY A 1 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V SER A 2 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V SER A 3 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V GLY A 4 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V SER A 5 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V SER A 6 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V GLY A 7 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V SER A 125 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V GLY A 126 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V PRO A 127 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V SER A 128 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V SER A 129 UNP Q9QYE9 CLONING ARTIFACT
SEQADV 2D9V GLY A 130 UNP Q9QYE9 CLONING ARTIFACT
SEQRES 1 A 130 GLY SER SER GLY SER SER GLY LEU VAL ARG GLY GLY TRP
SEQRES 2 A 130 LEU TRP ARG GLN SER SER ILE LEU ARG ARG TRP LYS ARG
SEQRES 3 A 130 ASN TRP PHE ALA LEU TRP LEU ASP GLY THR LEU GLY TYR
SEQRES 4 A 130 TYR HIS ASP GLU THR ALA GLN ASP GLU GLU ASP ARG VAL
SEQRES 5 A 130 VAL ILE HIS PHE ASN VAL ARG ASP ILE LYS VAL GLY GLN
SEQRES 6 A 130 GLU CYS GLN ASP VAL GLN PRO PRO GLU GLY ARG SER ARG
SEQRES 7 A 130 ASP GLY LEU LEU THR VAL ASN LEU ARG GLU GLY SER ARG
SEQRES 8 A 130 LEU HIS LEU CYS ALA GLU THR ARG ASP ASP ALA ILE ALA
SEQRES 9 A 130 TRP LYS THR ALA LEU MET GLU ALA ASN SER THR PRO ALA
SEQRES 10 A 130 PRO ALA GLY ALA THR VAL PRO SER GLY PRO SER SER GLY
HELIX 1 1 ARG A 99 ASN A 113 1 15
SHEET 1 A 7 ASP A 50 VAL A 53 0
SHEET 2 A 7 THR A 36 TYR A 40 -1 N LEU A 37 O VAL A 52
SHEET 3 A 7 TRP A 24 TRP A 32 -1 N TRP A 32 O THR A 36
SHEET 4 A 7 LEU A 8 GLN A 17 -1 N LEU A 14 O ASN A 27
SHEET 5 A 7 SER A 90 CYS A 95 -1 O CYS A 95 N TRP A 15
SHEET 6 A 7 LEU A 81 LEU A 86 -1 N VAL A 84 O LEU A 92
SHEET 7 A 7 VAL A 58 VAL A 63 -1 N ASP A 60 O ASN A 85
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes