Header list of 2d9h.pdb file
Complete list - r 9 2 Bytes
HEADER DNA BINDING PROTEIN 09-DEC-05 2D9H
TITLE SOLUTION STRUCTURE OF THE FORTH AND FIFTH ZF-C2H2 DOMAINS OF ZINC
TITLE 2 FINGER PROTEIN 692
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ZINC FINGER PROTEIN 692;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: ZF-C2H2 DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ZNF692;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050302-52;
SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS ZF-C2H2 DOMAIN, ZINC FINGER PROTEIN 692, STRUCTURAL GENOMICS, NPPSFA,
KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES,
KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING
KEYWDS 4 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.P.ZHANG,T.NAGASIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL
AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2D9H 1 REMARK SEQADV LINK
REVDAT 2 24-FEB-09 2D9H 1 VERSN
REVDAT 1 09-JUN-06 2D9H 0
JRNL AUTH H.P.ZHANG,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE FORTH AND FIFTH ZF-C2H2 DOMAINS OF
JRNL TITL 2 ZINC FINGER PROTEIN 692
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17
REMARK 3 AUTHORS : VARIAN (VNMR), GUNTENT,P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2D9H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-05.
REMARK 100 THE DEPOSITION ID IS D_1000025152.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.25MM 13C, 15N-LABELED PROTEIN;
REMARK 210 20MM D-TRIS-HCL(PH7.0), 100MM
REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3,
REMARK 210 50UM ZNCL2+1MM IDA
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.04,
REMARK 210 KUJIRA 0.93191, CYANA 2.0.17
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH
REMARK 210 THE LOWEST ENERGY, STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 VAL A 34 -35.95 -39.80
REMARK 500 1 LYS A 46 -178.27 -51.96
REMARK 500 1 PRO A 69 -175.74 -69.79
REMARK 500 1 GLN A 70 175.29 -56.22
REMARK 500 2 LYS A 46 -179.54 -52.05
REMARK 500 2 LEU A 67 175.28 -57.73
REMARK 500 2 SER A 77 -62.17 -91.65
REMARK 500 3 VAL A 34 -34.07 -37.82
REMARK 500 3 GLU A 42 1.37 -68.46
REMARK 500 3 LYS A 46 -179.68 -52.07
REMARK 500 3 LEU A 67 174.60 -57.36
REMARK 500 3 PRO A 69 -174.29 -69.80
REMARK 500 4 VAL A 34 -36.38 -34.13
REMARK 500 4 LYS A 46 179.77 -52.16
REMARK 500 4 PRO A 69 84.42 -69.80
REMARK 500 5 VAL A 34 -37.02 -34.87
REMARK 500 5 LYS A 46 -179.72 -53.57
REMARK 500 6 LYS A 46 -179.25 -52.10
REMARK 500 6 LEU A 67 177.79 -56.16
REMARK 500 6 PRO A 69 9.76 -69.77
REMARK 500 7 LYS A 46 -178.98 -51.99
REMARK 500 7 PRO A 69 -168.46 -69.76
REMARK 500 8 VAL A 34 -37.71 -32.17
REMARK 500 8 ALA A 36 -39.37 -34.49
REMARK 500 8 LYS A 46 -179.26 -52.71
REMARK 500 8 PRO A 69 80.14 -69.75
REMARK 500 9 LYS A 46 -179.43 -52.12
REMARK 500 10 VAL A 34 -37.45 -38.08
REMARK 500 10 GLU A 42 0.83 -66.95
REMARK 500 10 LYS A 46 -177.90 -52.12
REMARK 500 10 PRO A 69 -175.19 -69.79
REMARK 500 11 GLU A 42 0.03 -67.40
REMARK 500 11 LYS A 46 179.65 -51.97
REMARK 500 11 PRO A 69 -179.76 -69.77
REMARK 500 12 VAL A 34 -35.15 -32.82
REMARK 500 12 LYS A 46 -179.08 -52.32
REMARK 500 12 LEU A 67 170.28 -57.14
REMARK 500 12 PRO A 69 -173.71 -69.79
REMARK 500 12 PRO A 75 15.28 -69.84
REMARK 500 13 ALA A 21 -38.92 -33.10
REMARK 500 13 VAL A 34 -31.67 -36.42
REMARK 500 13 LYS A 46 -178.80 -52.13
REMARK 500 13 LEU A 67 173.63 -57.14
REMARK 500 13 PRO A 75 87.53 -69.77
REMARK 500 14 ILE A 12 -70.17 -56.19
REMARK 500 14 VAL A 34 -29.76 -35.99
REMARK 500 14 GLU A 42 1.80 -69.78
REMARK 500 14 LYS A 46 -177.82 -52.30
REMARK 500 14 PRO A 75 -174.45 -69.74
REMARK 500 15 LYS A 46 -179.22 -52.04
REMARK 500
REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 201 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 10 SG
REMARK 620 2 CYS A 13 SG 112.6
REMARK 620 3 HIS A 26 NE2 106.2 110.0
REMARK 620 4 HIS A 30 NE2 116.0 109.5 101.8
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 401 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 41 SG
REMARK 620 2 CYS A 44 SG 103.7
REMARK 620 3 HIS A 57 NE2 105.9 112.6
REMARK 620 4 HIS A 62 NE2 116.5 105.9 112.2
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSI002004816.2 RELATED DB: TARGETDB
DBREF 2D9H A 8 72 GB 21361766 NP_060335 417 481
SEQADV 2D9H GLY A 1 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H SER A 2 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H SER A 3 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H GLY A 4 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H SER A 5 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H SER A 6 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H GLY A 7 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H SER A 73 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H GLY A 74 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H PRO A 75 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H SER A 76 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H SER A 77 GB 21361766 CLONING ARTIFACT
SEQADV 2D9H GLY A 78 GB 21361766 CLONING ARTIFACT
SEQRES 1 A 78 GLY SER SER GLY SER SER GLY LEU GLN CYS GLU ILE CYS
SEQRES 2 A 78 GLY PHE THR CYS ARG GLN LYS ALA SER LEU ASN TRP HIS
SEQRES 3 A 78 GLN ARG LYS HIS ALA GLU THR VAL ALA ALA LEU ARG PHE
SEQRES 4 A 78 PRO CYS GLU PHE CYS GLY LYS ARG PHE GLU LYS PRO ASP
SEQRES 5 A 78 SER VAL ALA ALA HIS ARG SER LYS SER HIS PRO ALA LEU
SEQRES 6 A 78 LEU LEU ALA PRO GLN GLU SER SER GLY PRO SER SER GLY
HET ZN A 201 1
HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 GLN A 19 VAL A 34 1 16
HELIX 2 2 LYS A 50 SER A 61 1 12
SHEET 1 A 2 LEU A 8 GLN A 9 0
SHEET 2 A 2 THR A 16 CYS A 17 -1 O CYS A 17 N LEU A 8
SHEET 1 B 2 PHE A 39 PRO A 40 0
SHEET 2 B 2 ARG A 47 PHE A 48 -1 O PHE A 48 N PHE A 39
LINK SG CYS A 10 ZN ZN A 201 1555 1555 2.34
LINK SG CYS A 13 ZN ZN A 201 1555 1555 2.29
LINK NE2 HIS A 26 ZN ZN A 201 1555 1555 2.05
LINK NE2 HIS A 30 ZN ZN A 201 1555 1555 2.01
LINK SG CYS A 41 ZN ZN A 401 1555 1555 2.34
LINK SG CYS A 44 ZN ZN A 401 1555 1555 2.31
LINK NE2 HIS A 57 ZN ZN A 401 1555 1555 2.03
LINK NE2 HIS A 62 ZN ZN A 401 1555 1555 2.04
SITE 1 AC1 4 CYS A 10 CYS A 13 HIS A 26 HIS A 30
SITE 1 AC2 4 CYS A 41 CYS A 44 HIS A 57 HIS A 62
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes