Header list of 2d99.pdb file
Complete list - r 9 2 Bytes
HEADER TRANSCRIPTION 09-DEC-05 2D99
TITLE SOLUTION STRUCTURE OF RSGI RUH-048, A GTF2I DOMAIN IN HUMAN CDNA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING
COMPND 3 PROTEIN 1;
COMPND 4 CHAIN: A;
COMPND 5 FRAGMENT: GTF2I DOMAIN;
COMPND 6 SYNONYM: GTF2I REPEAT DOMAIN CONTAINING PROTEIN 1; MUSCLE TFII-I
COMPND 7 REPEAT DOMAIN-CONTAINING PROTEIN 1; GENERAL TRANSCRIPTION FACTOR III;
COMPND 8 SLOW-MUSCLE-FIBER ENHANCER BINDING PROTEIN; USE B1 BINDING PROTEIN;
COMPND 9 MUSTRD1/BEN; WILLIAMS-BEUREN SYNDROME CHROMOSOME REGION 11 PROTEIN;
COMPND 10 RSGI RUH-048, A GTF2I DOMAIN IN HUMAN CDNA;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NP005676;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050131-11;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS(E. COLI)
KEYWDS TRANSCRIPTION FACTOR, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT
KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Y.DOI-KATAYAMA,H.HIROTA,N.TOCHIO,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2D99 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2D99 1 VERSN
REVDAT 1 09-JUN-06 2D99 0
JRNL AUTH Y.DOI-KATAYAMA,H.HIROTA,N.TOCHIO,S.KOSHIBA,T.KIGAWA,
JRNL AUTH 2 S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-048, A GTF2I DOMAIN IN HUMAN
JRNL TITL 2 CDNA
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2D99 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-05.
REMARK 100 THE DEPOSITION ID IS D_1000025144.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.43MM GTF2I DOMAIN U-15N, 13C;
REMARK 210 20MM D-TRIS-HCL (PH 7.0); 100MM
REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90%
REMARK 210 H2O, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ
REMARK 210 SPECTROMETER MODEL : DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.9315, CYANA 2.0.17
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH
REMARK 210 THE LOWEST ENERGY,STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HIS A 72 H ARG A 75 1.50
REMARK 500 O GLU A 14 H VAL A 18 1.50
REMARK 500 O TYR A 34 H LEU A 38 1.51
REMARK 500 O GLN A 47 H ARG A 77 1.51
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 3 110.71 -164.93
REMARK 500 1 SER A 5 78.72 -171.97
REMARK 500 1 SER A 6 103.85 62.50
REMARK 500 1 VAL A 15 -73.10 -48.31
REMARK 500 1 GLU A 35 -30.60 -39.20
REMARK 500 1 ARG A 36 -67.91 -93.63
REMARK 500 1 GLU A 51 143.31 -35.06
REMARK 500 1 LEU A 53 -169.47 -162.06
REMARK 500 1 PHE A 55 109.24 -58.73
REMARK 500 1 ARG A 57 155.77 -37.96
REMARK 500 1 TYR A 61 171.69 -51.02
REMARK 500 1 ILE A 76 123.49 -38.41
REMARK 500 1 SER A 84 81.55 76.01
REMARK 500 1 SER A 89 -58.11 -166.59
REMARK 500 2 SER A 2 98.86 59.97
REMARK 500 2 SER A 3 120.14 175.11
REMARK 500 2 SER A 5 -61.50 -133.60
REMARK 500 2 SER A 6 111.55 -170.67
REMARK 500 2 GLU A 35 -31.51 -37.74
REMARK 500 2 ARG A 36 -67.55 -92.17
REMARK 500 2 GLU A 51 146.27 -31.94
REMARK 500 2 ARG A 57 151.50 -41.09
REMARK 500 2 SER A 84 110.56 -165.79
REMARK 500 2 SER A 88 -63.49 -168.88
REMARK 500 2 SER A 89 102.14 53.15
REMARK 500 3 VAL A 15 -72.59 -46.88
REMARK 500 3 ARG A 36 -65.94 -93.72
REMARK 500 3 GLU A 51 146.36 -31.91
REMARK 500 3 ARG A 57 149.77 -39.05
REMARK 500 3 SER A 84 88.13 55.19
REMARK 500 4 SER A 5 99.96 -163.26
REMARK 500 4 SER A 6 -67.72 -139.82
REMARK 500 4 VAL A 15 -73.37 -48.25
REMARK 500 4 GLU A 35 -32.43 -38.62
REMARK 500 4 ARG A 36 -67.41 -92.24
REMARK 500 4 GLU A 51 145.21 -31.26
REMARK 500 5 SER A 2 93.52 45.44
REMARK 500 5 VAL A 15 -72.68 -49.27
REMARK 500 5 GLU A 35 -30.13 -38.98
REMARK 500 5 ARG A 36 -66.98 -94.97
REMARK 500 5 GLU A 51 143.95 -33.81
REMARK 500 5 LEU A 53 -169.99 -160.98
REMARK 500 5 PHE A 55 109.56 -58.61
REMARK 500 5 ARG A 57 147.91 -37.11
REMARK 500 5 SER A 84 156.46 178.27
REMARK 500 5 SER A 85 -58.08 -136.17
REMARK 500 5 SER A 88 132.13 -175.06
REMARK 500 6 SER A 2 85.04 53.40
REMARK 500 6 SER A 3 103.57 56.95
REMARK 500 6 SER A 5 137.99 62.53
REMARK 500
REMARK 500 THIS ENTRY HAS 190 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700
REMARK 700 SHEET
REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSO002000922.1 RELATED DB: TARGETDB
DBREF 2D99 A 8 83 UNP Q9UHL9 GT2D1_HUMAN 128 203
SEQADV 2D99 GLY A 1 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 SER A 2 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 SER A 3 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 GLY A 4 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 SER A 5 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 SER A 6 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 GLY A 7 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 SER A 84 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 SER A 85 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 GLY A 86 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 PRO A 87 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 SER A 88 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 SER A 89 UNP Q9UHL9 CLONING ARTIFACT
SEQADV 2D99 GLY A 90 UNP Q9UHL9 CLONING ARTIFACT
SEQRES 1 A 90 GLY SER SER GLY SER SER GLY LEU ARG LYS MET VAL GLU
SEQRES 2 A 90 GLU VAL PHE ASP VAL LEU TYR SER GLU ALA LEU GLY ARG
SEQRES 3 A 90 ALA SER VAL VAL PRO LEU PRO TYR GLU ARG LEU LEU ARG
SEQRES 4 A 90 GLU PRO GLY LEU LEU ALA VAL GLN GLY LEU PRO GLU GLY
SEQRES 5 A 90 LEU ALA PHE ARG ARG PRO ALA GLU TYR ASP PRO LYS ALA
SEQRES 6 A 90 LEU MET ALA ILE LEU GLU HIS SER HIS ARG ILE ARG PHE
SEQRES 7 A 90 LYS LEU LYS ARG PRO SER SER GLY PRO SER SER GLY
HELIX 1 1 LEU A 8 ALA A 23 1 16
HELIX 2 2 TYR A 34 ARG A 39 1 6
HELIX 3 3 PRO A 63 HIS A 72 1 10
SHEET 1 A 2 LEU A 44 GLN A 47 0
SHEET 2 A 2 ARG A 77 LEU A 80 -1 N ARG A 77 O GLN A 47
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes