Header list of 2d8b.pdb file
Complete list - r 9 2 Bytes
HEADER PROTEIN BINDING 02-DEC-05 2D8B
TITLE SOLUTION STRUCTURE OF THE SECOND TANDEM COFILIN-DOMAIN OF MOUSE
TITLE 2 TWINFILIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TWINFILIN-1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: COFILIN HOMOLOGY DOMAIN, UNP RESIDUES 161-313;
COMPND 5 SYNONYM: TWINFILIN, A6 PROTEIN, PROTEIN TYROSINE KINASE 9;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: PTK9;
SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE PROTEIN SYNTHESIS;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050302-01
KEYWDS CELL-FREE PROTEIN SYNTHESIS, ACTIN-BINDING PROTEIN, DEVELOPMENTAL
KEYWDS 2 REGULATION, CELLULAR REMODELING, CYTOSKELETON, MORPHOLOGY,
KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL
KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS
KEYWDS 5 INITIATIVE, RSGI, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.K.GORONCY,T.KIGAWA,S.KOSHIBA,M.SATO,N.KOBAYASHI,N.TOCHIO,M.INOUE,
AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 4 09-MAR-22 2D8B 1 REMARK SEQADV
REVDAT 3 02-FEB-10 2D8B 1 JRNL SOURCE COMPND
REVDAT 2 24-FEB-09 2D8B 1 VERSN
REVDAT 1 02-JUN-06 2D8B 0
JRNL AUTH A.K.GORONCY,S.KOSHIBA,N.TOCHIO,T.TOMIZAWA,M.SATO,M.INOUE,
JRNL AUTH 2 S.WATANABE,Y.HAYASHIZAKI,A.TANAKA,T.KIGAWA,S.YOKOYAMA
JRNL TITL NMR SOLUTION STRUCTURES OF ACTIN DEPOLYMERIZING FACTOR
JRNL TITL 2 HOMOLOGY DOMAINS
JRNL REF PROTEIN SCI. V. 18 2384 2009
JRNL REFN ISSN 0961-8368
JRNL PMID 19768801
JRNL DOI 10.1002/PRO.248
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.2.1
REMARK 3 AUTHORS : BRUKER (XWINNMR), PETER GUNTERT ET AL. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2D8B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-05.
REMARK 100 THE DEPOSITION ID IS D_1000025112.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.44MM COFILIN HOMOLOGY DOMAIN,
REMARK 210 20MM D-TRIS-HCL, 100MM NACL, 1MM
REMARK 210 D-DTT, 0.02 % NAN3; 90% H2O, 10%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.899A, CYANA 2.2.1
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 THR A 11 44.88 -95.83
REMARK 500 1 ASP A 12 -80.82 -74.65
REMARK 500 1 VAL A 13 37.76 39.61
REMARK 500 1 TYR A 47 120.72 -174.27
REMARK 500 1 THR A 64 101.64 -163.29
REMARK 500 1 ASP A 79 27.84 -159.13
REMARK 500 1 TYR A 109 -51.39 -131.52
REMARK 500 1 SER A 112 170.08 -51.93
REMARK 500 1 ILE A 129 -71.67 -55.87
REMARK 500 1 GLN A 133 -69.92 -132.02
REMARK 500 1 ARG A 140 141.16 -178.69
REMARK 500 1 ASN A 146 -68.06 -148.40
REMARK 500 1 LEU A 150 87.07 -68.42
REMARK 500 1 SER A 165 -74.05 -96.62
REMARK 500 2 VAL A 9 129.22 -176.17
REMARK 500 2 HIS A 19 136.54 -170.88
REMARK 500 2 TYR A 47 121.80 -174.51
REMARK 500 2 GLU A 57 71.27 59.91
REMARK 500 2 THR A 64 100.98 -161.11
REMARK 500 2 ILE A 76 109.18 -51.36
REMARK 500 2 SER A 80 141.40 -179.17
REMARK 500 2 TYR A 109 -52.25 -131.43
REMARK 500 2 SER A 112 170.65 -52.01
REMARK 500 2 ILE A 129 -72.21 -56.32
REMARK 500 2 GLN A 133 -69.93 -132.08
REMARK 500 2 ARG A 140 139.41 -176.54
REMARK 500 2 ASN A 146 -67.85 -149.13
REMARK 500 2 LEU A 150 87.03 -68.34
REMARK 500 2 SER A 161 -168.64 -60.85
REMARK 500 3 THR A 11 -73.03 -101.16
REMARK 500 3 GLN A 20 -168.34 -70.80
REMARK 500 3 TYR A 47 119.32 -173.60
REMARK 500 3 GLU A 57 70.77 59.44
REMARK 500 3 THR A 64 114.81 -165.25
REMARK 500 3 SER A 80 145.58 -177.37
REMARK 500 3 TYR A 109 -51.61 -136.21
REMARK 500 3 SER A 112 177.14 -55.76
REMARK 500 3 ILE A 129 -71.68 -57.00
REMARK 500 3 GLN A 133 -69.50 -131.68
REMARK 500 3 ARG A 140 141.08 179.24
REMARK 500 3 ASN A 146 -67.63 -148.80
REMARK 500 3 SER A 164 -40.68 -131.87
REMARK 500 4 VAL A 9 44.39 -99.85
REMARK 500 4 VAL A 13 -74.83 -133.71
REMARK 500 4 THR A 17 148.05 -174.75
REMARK 500 4 LYS A 18 -72.07 -113.85
REMARK 500 4 LEU A 22 -49.33 -142.10
REMARK 500 4 ASN A 46 29.17 -140.38
REMARK 500 4 THR A 64 69.59 -151.35
REMARK 500 4 SER A 80 145.25 -176.77
REMARK 500
REMARK 500 THIS ENTRY HAS 259 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMI002020752.1 RELATED DB: TARGETDB
DBREF 2D8B A 8 160 UNP Q91YR1 TWF1_MOUSE 161 313
SEQADV 2D8B GLY A 1 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B SER A 2 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B SER A 3 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B GLY A 4 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B SER A 5 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B SER A 6 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B GLY A 7 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B SER A 161 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B GLY A 162 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B PRO A 163 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B SER A 164 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B SER A 165 UNP Q91YR1 EXPRESSION TAG
SEQADV 2D8B GLY A 166 UNP Q91YR1 EXPRESSION TAG
SEQRES 1 A 166 GLY SER SER GLY SER SER GLY GLU VAL GLN THR ASP VAL
SEQRES 2 A 166 SER VAL ASP THR LYS HIS GLN THR LEU GLN GLY VAL ALA
SEQRES 3 A 166 PHE PRO ILE SER ARG ASP ALA PHE GLN ALA LEU GLU LYS
SEQRES 4 A 166 LEU SER LYS LYS GLN LEU ASN TYR VAL GLN LEU GLU ILE
SEQRES 5 A 166 ASP ILE LYS ASN GLU THR ILE ILE LEU ALA ASN THR GLU
SEQRES 6 A 166 ASN THR GLU LEU ARG ASP LEU PRO LYS ARG ILE PRO LYS
SEQRES 7 A 166 ASP SER ALA ARG TYR HIS PHE PHE LEU TYR LYS HIS SER
SEQRES 8 A 166 HIS GLU GLY ASP TYR LEU GLU SER VAL VAL PHE ILE TYR
SEQRES 9 A 166 SER MET PRO GLY TYR THR CYS SER ILE ARG GLU ARG MET
SEQRES 10 A 166 LEU TYR SER SER CYS LYS SER PRO LEU LEU GLU ILE VAL
SEQRES 11 A 166 GLU ARG GLN LEU GLN MET ASP VAL ILE ARG LYS ILE GLU
SEQRES 12 A 166 ILE ASP ASN GLY ASP GLU LEU THR ALA ASP PHE LEU TYR
SEQRES 13 A 166 ASP GLU VAL HIS SER GLY PRO SER SER GLY
HELIX 1 1 SER A 30 LYS A 42 1 13
HELIX 2 2 ASP A 71 ILE A 76 1 6
HELIX 3 3 SER A 112 CYS A 122 1 11
HELIX 4 4 LYS A 123 GLU A 131 1 9
HELIX 5 5 THR A 151 SER A 161 1 11
SHEET 1 A 5 THR A 58 ASN A 63 0
SHEET 2 A 5 GLN A 49 ASP A 53 -1 N GLN A 49 O ALA A 62
SHEET 3 A 5 ARG A 82 HIS A 92 -1 O TYR A 83 N LEU A 50
SHEET 4 A 5 ASP A 95 SER A 105 -1 O VAL A 101 N PHE A 86
SHEET 5 A 5 ARG A 140 ILE A 144 1 O ILE A 142 N PHE A 102
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes