Header list of 2cqo.pdb file
Complete list - r 9 2 Bytes
HEADER RIBOSOME 20-MAY-05 2CQO
TITLE SOLUTION STRUCTURE OF THE S1 RNA BINDING DOMAIN OF HUMAN HYPOTHETICAL
TITLE 2 PROTEIN FLJ11067
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NUCLEOLAR PROTEIN OF 40 KDA;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: S1 DOMAIN;
COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN FLJ11067, PNO40, PUTATIVE S1 RNA
COMPND 6 BINDING DOMAIN PROTEIN, PS1D PROTEIN, PNN-INTERACTING NUCLEOLAR
COMPND 7 PROTEIN;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PS1D;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050111-18;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS S1 DOMAIN, OB-FOLD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON
KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RIBOSOME
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2CQO 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2CQO 1 VERSN
REVDAT 1 20-NOV-05 2CQO 0
JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,
JRNL AUTH 2 S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE S1 RNA BINDING DOMAIN OF HUMAN
JRNL TITL 2 HYPOTHETICAL PROTEIN FLJ11067
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2CQO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-05.
REMARK 100 THE DEPOSITION ID IS D_1000024515.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.4MM 13C/15N-PROTEIN; 20MM D
REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT;
REMARK 210 0.02% NAN3
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.9295, OLIVIA 1.10.5,
REMARK 210 CYANA 2.0.17
REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS,
REMARK 210 SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 PRO A 6 -174.00 -69.71
REMARK 500 1 GLU A 10 58.44 -93.71
REMARK 500 1 LEU A 12 155.25 -47.85
REMARK 500 1 HIS A 45 153.18 -49.53
REMARK 500 1 CYS A 52 -177.70 -59.76
REMARK 500 1 VAL A 63 125.89 -38.90
REMARK 500 1 SER A 107 92.20 -54.16
REMARK 500 2 SER A -5 -40.58 -130.53
REMARK 500 2 ASN A 2 126.22 -38.71
REMARK 500 2 MET A 9 94.65 -49.52
REMARK 500 2 PRO A 13 -171.81 -69.75
REMARK 500 2 CYS A 52 -174.99 -68.97
REMARK 500 2 ARG A 53 105.83 -59.97
REMARK 500 2 ASP A 55 -57.75 -124.49
REMARK 500 2 GLN A 92 43.74 -95.25
REMARK 500 3 MET A 9 -30.52 -38.62
REMARK 500 3 PRO A 13 -173.19 -69.85
REMARK 500 3 HIS A 45 151.73 -49.59
REMARK 500 3 CYS A 52 -174.86 -54.01
REMARK 500 3 GLN A 92 48.11 -90.22
REMARK 500 4 PRO A 6 -171.82 -69.88
REMARK 500 4 CYS A 52 -66.74 -129.75
REMARK 500 4 GLN A 92 45.50 -90.90
REMARK 500 4 ASP A 99 75.96 -112.38
REMARK 500 4 PRO A 100 2.66 -69.78
REMARK 500 5 THR A 8 -19.61 -49.40
REMARK 500 5 HIS A 45 152.35 -47.75
REMARK 500 5 CYS A 52 -73.84 -131.48
REMARK 500 5 VAL A 54 68.08 -116.54
REMARK 500 5 GLN A 92 47.56 -98.45
REMARK 500 5 ASP A 99 78.83 -117.71
REMARK 500 5 ASN A 102 42.18 71.51
REMARK 500 6 LEU A 12 156.40 -46.86
REMARK 500 6 HIS A 45 153.75 -48.66
REMARK 500 6 CYS A 52 178.31 -52.75
REMARK 500 6 ARG A 53 97.29 -63.61
REMARK 500 6 VAL A 63 121.76 -35.35
REMARK 500 6 GLN A 92 41.33 -88.98
REMARK 500 6 PRO A 100 0.58 -69.70
REMARK 500 7 PRO A 6 -172.96 -69.76
REMARK 500 7 LEU A 12 156.26 -41.20
REMARK 500 7 CYS A 52 -71.04 -128.19
REMARK 500 7 ASP A 99 76.16 -119.99
REMARK 500 7 SER A 110 112.67 -38.02
REMARK 500 8 GLU A 7 92.03 -41.33
REMARK 500 8 PRO A 13 -177.63 -69.79
REMARK 500 8 CYS A 52 175.96 -53.22
REMARK 500 8 THR A 94 -39.90 -134.87
REMARK 500 8 PRO A 109 2.73 -69.73
REMARK 500 9 SER A -5 92.28 -57.36
REMARK 500
REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSI002006093.1 RELATED DB: TARGETDB
DBREF 2CQO A 1 106 UNP 73921227 NO40_HUMAN 1 106
SEQADV 2CQO GLY A -6 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO SER A -5 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO SER A -4 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO GLY A -3 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO SER A -2 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO SER A -1 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO GLY A 0 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO SER A 107 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO GLY A 108 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO PRO A 109 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO SER A 110 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO SER A 111 UNP Q9NP64 CLONING ARTIFACT
SEQADV 2CQO GLY A 112 UNP Q9NP64 CLONING ARTIFACT
SEQRES 1 A 119 GLY SER SER GLY SER SER GLY MET ASN SER GLY ARG PRO
SEQRES 2 A 119 GLU THR MET GLU ASN LEU PRO ALA LEU TYR THR ILE PHE
SEQRES 3 A 119 GLN GLY GLU VAL ALA MET VAL THR ASP TYR GLY ALA PHE
SEQRES 4 A 119 ILE LYS ILE PRO GLY CYS ARG LYS GLN GLY LEU VAL HIS
SEQRES 5 A 119 ARG THR HIS MET SER SER CYS ARG VAL ASP LYS PRO SER
SEQRES 6 A 119 GLU ILE VAL ASP VAL GLY ASP LYS VAL TRP VAL LYS LEU
SEQRES 7 A 119 ILE GLY ARG GLU MET LYS ASN ASP ARG ILE LYS VAL SER
SEQRES 8 A 119 LEU SER MET LYS VAL VAL ASN GLN GLY THR GLY LYS ASP
SEQRES 9 A 119 LEU ASP PRO ASN ASN VAL ILE ILE GLU SER GLY PRO SER
SEQRES 10 A 119 SER GLY
HELIX 1 1 ARG A 46 MET A 49 1 4
HELIX 2 2 PRO A 57 GLU A 59 1 3
SHEET 1 A 5 THR A 17 THR A 27 0
SHEET 2 A 5 GLY A 30 LYS A 34 -1 O GLY A 30 N THR A 27
SHEET 3 A 5 GLN A 41 HIS A 45 -1 O VAL A 44 N ALA A 31
SHEET 4 A 5 ARG A 80 SER A 86 1 O LEU A 85 N LEU A 43
SHEET 5 A 5 ASP A 65 LYS A 77 -1 N GLU A 75 O LYS A 82
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes