Header list of 2cqk.pdb file
Complete list - r 9 2 Bytes
HEADER RNA BINDING PROTEIN 20-MAY-05 2CQK
TITLE SOLUTION STRUCTURE OF THE LA DOMAIN OF C-MPL BINDING PROTEIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: C-MPL BINDING PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: LA DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: RIKEN CDNA IOH13489;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041004-02;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS LA DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN
KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2CQK 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2CQK 1 VERSN
REVDAT 1 20-NOV-05 2CQK 0
JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,
JRNL AUTH 2 S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE LA DOMAIN OF C-MPL BINDING PROTEIN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2CQK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-05.
REMARK 100 THE DEPOSITION ID IS D_1000024511.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.4MM 13C/15N-PROTEIN; 20MM D
REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT;
REMARK 210 0.02% NAN3
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.9295, OLIVIA 1.10.5,
REMARK 210 CYANA 2.0.17
REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS,
REMARK 210 SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 40 -59.23 -132.54
REMARK 500 1 ALA A 43 174.63 -49.72
REMARK 500 1 MET A 76 172.28 -47.88
REMARK 500 1 ASP A 79 33.26 -92.60
REMARK 500 1 MET A 112 -33.10 -36.25
REMARK 500 1 GLU A 120 -32.29 -130.22
REMARK 500 1 SER A 125 96.70 -45.00
REMARK 500 1 HIS A 126 38.54 -85.37
REMARK 500 1 SER A 135 111.95 -163.32
REMARK 500 2 ALA A 43 136.59 -35.60
REMARK 500 2 MET A 76 171.30 -47.50
REMARK 500 2 ASP A 79 30.06 -94.72
REMARK 500 2 MET A 112 -27.62 -39.43
REMARK 500 2 ASP A 116 158.70 -48.73
REMARK 500 3 ASP A 69 79.42 -102.18
REMARK 500 3 GLN A 80 27.99 45.04
REMARK 500 3 MET A 112 -26.16 -39.92
REMARK 500 3 HIS A 126 34.77 -88.97
REMARK 500 3 ARG A 128 38.56 -84.89
REMARK 500 4 MET A 76 174.11 -47.74
REMARK 500 4 ASP A 79 33.79 -91.73
REMARK 500 4 MET A 112 -25.69 -39.91
REMARK 500 4 ASP A 116 134.21 -39.88
REMARK 500 4 SER A 125 95.05 -63.96
REMARK 500 5 SER A 41 163.61 -42.20
REMARK 500 5 MET A 76 177.60 -48.37
REMARK 500 5 ASP A 79 31.37 -88.98
REMARK 500 5 ASP A 116 140.18 -38.42
REMARK 500 5 PRO A 133 -176.64 -69.75
REMARK 500 6 SER A 41 95.56 -52.69
REMARK 500 6 MET A 112 -32.21 -34.90
REMARK 500 6 ASP A 116 128.20 -39.95
REMARK 500 7 HIS A 126 35.30 -91.90
REMARK 500 8 ALA A 43 132.55 -39.70
REMARK 500 8 MET A 76 -175.93 -51.20
REMARK 500 8 MET A 90 136.56 -34.95
REMARK 500 8 MET A 112 -32.19 -35.64
REMARK 500 8 SER A 125 102.66 -52.51
REMARK 500 8 HIS A 126 -39.78 -34.44
REMARK 500 8 SER A 134 -51.28 -125.81
REMARK 500 9 MET A 76 164.43 -43.56
REMARK 500 9 MET A 112 -36.43 -34.23
REMARK 500 9 SER A 125 92.91 -45.69
REMARK 500 9 ARG A 128 79.87 -106.45
REMARK 500 10 ASP A 69 75.53 -101.51
REMARK 500 10 MET A 76 170.06 -45.59
REMARK 500 10 SER A 125 99.60 -69.84
REMARK 500 11 SER A 37 169.65 -49.10
REMARK 500 11 SER A 40 40.97 -95.95
REMARK 500 11 MET A 76 172.34 -50.93
REMARK 500
REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSI002013489.1 RELATED DB: TARGETDB
DBREF 2CQK A 43 130 UNP Q71RC2 LARP4_HUMAN 43 130
SEQADV 2CQK GLY A 36 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK SER A 37 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK SER A 38 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK GLY A 39 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK SER A 40 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK SER A 41 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK GLY A 42 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK SER A 131 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK GLY A 132 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK PRO A 133 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK SER A 134 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK SER A 135 UNP Q71RC2 CLONING ARTIFACT
SEQADV 2CQK GLY A 136 UNP Q71RC2 CLONING ARTIFACT
SEQRES 1 A 101 GLY SER SER GLY SER SER GLY ALA VAL SER THR GLU ASP
SEQRES 2 A 101 LEU LYS GLU CYS LEU LYS LYS GLN LEU GLU PHE CYS PHE
SEQRES 3 A 101 SER ARG GLU ASN LEU SER LYS ASP LEU TYR LEU ILE SER
SEQRES 4 A 101 GLN MET ASP SER ASP GLN PHE ILE PRO ILE TRP THR VAL
SEQRES 5 A 101 ALA ASN MET GLU GLU ILE LYS LYS LEU THR THR ASP PRO
SEQRES 6 A 101 ASP LEU ILE LEU GLU VAL LEU ARG SER SER PRO MET VAL
SEQRES 7 A 101 GLN VAL ASP GLU LYS GLY GLU LYS VAL ARG PRO SER HIS
SEQRES 8 A 101 LYS ARG CYS ILE SER GLY PRO SER SER GLY
HELIX 1 1 THR A 46 PHE A 61 1 16
HELIX 2 2 ARG A 63 LYS A 68 1 6
HELIX 3 3 LEU A 70 GLN A 75 1 6
HELIX 4 4 ILE A 84 ASN A 89 1 6
HELIX 5 5 GLU A 91 LEU A 96 1 6
HELIX 6 6 PRO A 100 SER A 109 1 10
SHEET 1 A 3 PHE A 81 PRO A 83 0
SHEET 2 A 3 LYS A 121 ARG A 123 -1 O VAL A 122 N ILE A 82
SHEET 3 A 3 VAL A 113 VAL A 115 -1 N GLN A 114 O ARG A 123
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes