Header list of 2cod.pdb file
Complete list - r 9 2 Bytes
HEADER SIGNALING PROTEIN 17-MAY-05 2COD
TITLE SOLUTION STRUCTURE OF THE N-TERMINAL PH DOMAIN OF ARAP2 PROTEIN FROM
TITLE 2 HUMAN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CENTAURIN-DELTA 1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: PH DOMAIN;
COMPND 5 SYNONYM: CNT-D1, ARF-GAP, RHO-GAP, ANKYRIN REPEAT AND PLECKSTRIN
COMPND 6 HOMOLOGY DOMAIN-CONTAINING PROTEIN 2, PARX PROTEIN, ARAP2;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ARAP2;
SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE PROTEIN SYNTHESIS;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050125-06
KEYWDS ARF GAP AND RHO GAP WITH ANKYRIN REPEAT AND PH DOMAINS (ARAP) 2, PH
KEYWDS 2 DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN
KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 4 09-MAR-22 2COD 1 REMARK SEQADV
REVDAT 3 18-AUG-09 2COD 1 JRNL TITLE
REVDAT 2 24-FEB-09 2COD 1 VERSN
REVDAT 1 17-NOV-05 2COD 0
JRNL AUTH H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL PH DOMAIN OF ARAP2
JRNL TITL 2 PROTEIN FROM HUMAN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2COD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-05.
REMARK 100 THE DEPOSITION ID IS D_1000024445.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 296
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.62MM PH DOMAIN U-13C, 15N;
REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM
REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90%
REMARK 210 H2O, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.9295, CYANA 2.0.17
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH
REMARK 210 THE LEAST RESTRAINT VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLN A 20 60.13 -111.14
REMARK 500 1 LYS A 22 33.83 38.95
REMARK 500 1 ILE A 57 103.37 -50.18
REMARK 500 1 GLN A 74 -75.36 -83.88
REMARK 500 1 PRO A 112 93.54 -69.75
REMARK 500 2 TRP A 13 107.46 -56.52
REMARK 500 2 ILE A 57 103.98 -57.65
REMARK 500 2 ARG A 75 120.57 -170.64
REMARK 500 2 THR A 76 149.76 -39.16
REMARK 500 2 ILE A 91 -71.82 -48.36
REMARK 500 3 LYS A 10 139.99 -170.35
REMARK 500 3 LEU A 17 73.59 -108.33
REMARK 500 3 PRO A 19 -177.79 -69.72
REMARK 500 3 ARG A 23 45.65 36.22
REMARK 500 3 ASN A 42 91.48 -63.05
REMARK 500 3 LYS A 44 -61.20 -103.44
REMARK 500 3 ILE A 57 107.41 -54.10
REMARK 500 3 ASP A 65 -177.20 -58.19
REMARK 500 3 GLN A 74 -52.40 -133.14
REMARK 500 4 SER A 3 150.88 -48.17
REMARK 500 4 LEU A 17 93.92 -65.00
REMARK 500 4 MET A 24 -57.22 -124.27
REMARK 500 4 LYS A 44 84.74 -66.21
REMARK 500 4 GLU A 45 94.53 -68.86
REMARK 500 4 TYR A 47 40.98 -89.29
REMARK 500 4 THR A 73 -38.42 -39.66
REMARK 500 4 GLN A 74 -62.75 -134.96
REMARK 500 5 LEU A 17 78.27 -100.34
REMARK 500 5 ASN A 42 106.06 -54.75
REMARK 500 5 ASN A 66 37.06 35.88
REMARK 500 5 THR A 104 41.70 32.16
REMARK 500 6 LYS A 10 147.34 -171.54
REMARK 500 6 LEU A 17 72.50 -104.37
REMARK 500 6 MET A 24 127.15 -35.33
REMARK 500 6 ASN A 42 -39.82 -34.80
REMARK 500 6 GLU A 43 -65.54 -90.96
REMARK 500 6 ILE A 57 98.64 -55.55
REMARK 500 6 ARG A 75 121.48 -174.94
REMARK 500 6 THR A 76 141.21 -34.91
REMARK 500 6 SER A 107 96.49 -53.81
REMARK 500 7 PRO A 19 -164.22 -69.76
REMARK 500 7 TYR A 47 134.84 -39.67
REMARK 500 7 ASP A 65 -175.29 -52.86
REMARK 500 7 ASP A 89 -72.03 -64.99
REMARK 500 7 GLN A 106 41.22 -85.51
REMARK 500 8 LEU A 17 75.16 -61.07
REMARK 500 8 PRO A 19 -169.51 -69.81
REMARK 500 8 MET A 24 86.14 -51.80
REMARK 500 8 PHE A 25 -73.40 -35.92
REMARK 500 8 GLN A 26 111.58 -164.90
REMARK 500
REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700
REMARK 700 SHEET
REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSO002002027.1 RELATED DB: TARGETDB
DBREF 2COD A 8 109 UNP Q8WZ64 CEND1_HUMAN 483 584
SEQADV 2COD GLY A 1 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD SER A 2 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD SER A 3 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD GLY A 4 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD SER A 5 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD SER A 6 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD GLY A 7 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD SER A 110 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD GLY A 111 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD PRO A 112 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD SER A 113 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD SER A 114 UNP Q8WZ64 EXPRESSION TAG
SEQADV 2COD GLY A 115 UNP Q8WZ64 EXPRESSION TAG
SEQRES 1 A 115 GLY SER SER GLY SER SER GLY LYS VAL LYS SER GLY TRP
SEQRES 2 A 115 LEU ASP LYS LEU SER PRO GLN GLY LYS ARG MET PHE GLN
SEQRES 3 A 115 LYS ARG TRP VAL LYS PHE ASP GLY LEU SER ILE SER TYR
SEQRES 4 A 115 TYR ASN ASN GLU LYS GLU MET TYR SER LYS GLY ILE ILE
SEQRES 5 A 115 PRO LEU SER ALA ILE SER THR VAL ARG VAL GLN GLY ASP
SEQRES 6 A 115 ASN LYS PHE GLU VAL VAL THR THR GLN ARG THR PHE VAL
SEQRES 7 A 115 PHE ARG VAL GLU LYS GLU GLU GLU ARG ASN ASP TRP ILE
SEQRES 8 A 115 SER ILE LEU LEU ASN ALA LEU LYS SER GLN SER LEU THR
SEQRES 9 A 115 SER GLN SER GLN ALA SER GLY PRO SER SER GLY
HELIX 1 1 GLU A 84 GLN A 101 1 18
SHEET 1 A 7 ILE A 51 PRO A 53 0
SHEET 2 A 7 SER A 36 TYR A 40 -1
SHEET 3 A 7 GLN A 26 PHE A 32 -1
SHEET 4 A 7 LYS A 10 LYS A 16 -1
SHEET 5 A 7 THR A 76 ARG A 80 -1
SHEET 6 A 7 LYS A 67 VAL A 71 -1
SHEET 7 A 7 THR A 59 VAL A 62 -1
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes