Header list of 2chj.pdb file
Complete list - r 25 2 Bytes
HEADER NUCLEIC ACID 15-MAR-06 2CHJ
TITLE NMR STRUCTURE OF TGLGLT QUADRUPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 5'-D(*TP*G LCGP*G LCGP*TP)-3';
COMPND 3 CHAIN: A, B, C, D;
COMPND 4 OTHER_DETAILS: TELOMERIC SEQUENCE FROM O.NOVA
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES
KEYWDS NUCLEIC ACID, QUADRUPLEX, LNA, LOCKED NUCLEIC ACID
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.T.NIELSEN,M.PETERSEN
REVDAT 2 24-FEB-09 2CHJ 1 VERSN
REVDAT 1 19-APR-06 2CHJ 0
JRNL AUTH J.T.NIELSEN,K.ARAR,M.PETERSEN
JRNL TITL NMR SOLUTION STRUCTURES OF LNA (LOCKED NUCLEIC
JRNL TITL 2 ACID) MODIFIED QUADRUPLEXES
JRNL REF NUCLEIC ACIDS RES. V. 34 2006 2006
JRNL REFN ISSN 0305-1048
JRNL PMID 16614450
JRNL DOI 10.1093/NAR/GKL144
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN
REMARK 3 THE JRNL CITATION ABOVE.
REMARK 4
REMARK 4 2CHJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-06.
REMARK 100 THE PDBE ID CODE IS EBI-28158.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298.0
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 100MM
REMARK 210 PRESSURE : 1.0
REMARK 210 SAMPLE CONTENTS : D2O,10% D20/90% H2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY;COSY;TOCSY;HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 800
REMARK 210 SPECTROMETER MODEL : UNITYINOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : X-PLOR
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 20
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NONE
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES
REMARK 500 1 DT A 1 O4' - C1' - C2' ANGL. DEV. = -3.5 DEGREES
REMARK 500 1 DT A 1 O4' - C1' - N1 ANGL. DEV. = 6.6 DEGREES
REMARK 500 1 DG A 2 C5' - C4' - C3' ANGL. DEV. = -7.9 DEGREES
REMARK 500 1 DG A 2 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES
REMARK 500 1 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES
REMARK 500 1 DG A 4 O4' - C4' - C3' ANGL. DEV. = 3.8 DEGREES
REMARK 500 1 DG A 4 O3' - P - OP1 ANGL. DEV. = 10.9 DEGREES
REMARK 500 1 DG A 4 O3' - P - OP2 ANGL. DEV. = 10.9 DEGREES
REMARK 500 1 DG A 4 C3' - O3' - P ANGL. DEV. = 28.7 DEGREES
REMARK 500 1 DT A 6 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES
REMARK 500 1 DT A 6 O3' - P - O5' ANGL. DEV. = 22.5 DEGREES
REMARK 500 1 DT A 6 C3' - O3' - P ANGL. DEV. = -19.5 DEGREES
REMARK 500 1 DT B 7 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES
REMARK 500 1 DT B 7 O4' - C1' - C2' ANGL. DEV. = -3.5 DEGREES
REMARK 500 1 DT B 7 O4' - C1' - N1 ANGL. DEV. = 6.7 DEGREES
REMARK 500 1 DG B 8 C5' - C4' - C3' ANGL. DEV. = -7.9 DEGREES
REMARK 500 1 DG B 8 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES
REMARK 500 1 DG B 10 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES
REMARK 500 1 DG B 10 O3' - P - OP1 ANGL. DEV. = 10.8 DEGREES
REMARK 500 1 DG B 10 O3' - P - OP2 ANGL. DEV. = 10.8 DEGREES
REMARK 500 1 DG B 10 C3' - O3' - P ANGL. DEV. = 28.1 DEGREES
REMARK 500 1 DT B 12 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES
REMARK 500 1 DT B 12 O3' - P - O5' ANGL. DEV. = 22.4 DEGREES
REMARK 500 1 DT B 12 C3' - O3' - P ANGL. DEV. = -18.6 DEGREES
REMARK 500 1 DT C 13 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES
REMARK 500 1 DT C 13 O4' - C1' - C2' ANGL. DEV. = -3.7 DEGREES
REMARK 500 1 DT C 13 O4' - C1' - N1 ANGL. DEV. = 6.9 DEGREES
REMARK 500 1 DG C 14 C5' - C4' - C3' ANGL. DEV. = -7.8 DEGREES
REMARK 500 1 DG C 14 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES
REMARK 500 1 DG C 16 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES
REMARK 500 1 DG C 16 O3' - P - OP1 ANGL. DEV. = 11.1 DEGREES
REMARK 500 1 DG C 16 O3' - P - OP2 ANGL. DEV. = 11.1 DEGREES
REMARK 500 1 DG C 16 C3' - O3' - P ANGL. DEV. = 28.0 DEGREES
REMARK 500 1 DT C 18 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES
REMARK 500 1 DT C 18 O3' - P - O5' ANGL. DEV. = 22.4 DEGREES
REMARK 500 1 DT C 18 C3' - O3' - P ANGL. DEV. = -18.5 DEGREES
REMARK 500 1 DT D 19 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES
REMARK 500 1 DT D 19 O4' - C1' - C2' ANGL. DEV. = -3.5 DEGREES
REMARK 500 1 DT D 19 O4' - C1' - N1 ANGL. DEV. = 6.5 DEGREES
REMARK 500 1 DG D 20 C5' - C4' - C3' ANGL. DEV. = -7.8 DEGREES
REMARK 500 1 DG D 20 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES
REMARK 500 1 DG D 22 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES
REMARK 500 1 DG D 22 O4' - C4' - C3' ANGL. DEV. = 3.6 DEGREES
REMARK 500 1 DG D 22 O3' - P - OP1 ANGL. DEV. = 11.3 DEGREES
REMARK 500 1 DG D 22 O3' - P - OP2 ANGL. DEV. = 11.3 DEGREES
REMARK 500 1 DG D 22 C3' - O3' - P ANGL. DEV. = 28.2 DEGREES
REMARK 500 1 DT D 24 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES
REMARK 500 1 DT D 24 O3' - P - O5' ANGL. DEV. = 21.5 DEGREES
REMARK 500 1 DT D 24 C3' - O3' - P ANGL. DEV. = -18.7 DEGREES
REMARK 500
REMARK 500 THIS ENTRY HAS 983 ANGLE DEVIATIONS
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 DT B 7 0.06 SIDE CHAIN
REMARK 500 1 DT C 13 0.06 SIDE CHAIN
REMARK 500 2 DG A 2 0.06 SIDE CHAIN
REMARK 500 2 DT C 13 0.06 SIDE CHAIN
REMARK 500 2 DT D 19 0.06 SIDE CHAIN
REMARK 500 2 DG D 20 0.06 SIDE CHAIN
REMARK 500 3 DT A 1 0.06 SIDE CHAIN
REMARK 500 3 DT B 7 0.06 SIDE CHAIN
REMARK 500 3 DG B 8 0.06 SIDE CHAIN
REMARK 500 3 DG C 14 0.06 SIDE CHAIN
REMARK 500 4 DT C 13 0.06 SIDE CHAIN
REMARK 500 4 DT D 19 0.06 SIDE CHAIN
REMARK 500 4 DG D 20 0.07 SIDE CHAIN
REMARK 500 5 DT D 19 0.06 SIDE CHAIN
REMARK 500 6 DT B 7 0.06 SIDE CHAIN
REMARK 500 6 DG B 8 0.06 SIDE CHAIN
REMARK 500 6 DT C 13 0.06 SIDE CHAIN
REMARK 500 6 DG C 14 0.06 SIDE CHAIN
REMARK 500 7 DT D 19 0.06 SIDE CHAIN
REMARK 500 8 DT C 13 0.06 SIDE CHAIN
REMARK 500 8 DG D 20 0.06 SIDE CHAIN
REMARK 500 9 DG D 20 0.06 SIDE CHAIN
REMARK 500 10 DT C 13 0.06 SIDE CHAIN
REMARK 500 10 DG C 14 0.06 SIDE CHAIN
REMARK 500 11 DG B 8 0.06 SIDE CHAIN
REMARK 500 12 DT A 1 0.06 SIDE CHAIN
REMARK 500 12 DT D 19 0.06 SIDE CHAIN
REMARK 500 13 DT A 1 0.06 SIDE CHAIN
REMARK 500 14 DT A 1 0.06 SIDE CHAIN
REMARK 500 15 DT B 7 0.06 SIDE CHAIN
REMARK 500 15 DG C 14 0.07 SIDE CHAIN
REMARK 500 15 DT D 19 0.06 SIDE CHAIN
REMARK 500 16 DT C 13 0.06 SIDE CHAIN
REMARK 500 16 DG C 14 0.06 SIDE CHAIN
REMARK 500 16 DG D 20 0.06 SIDE CHAIN
REMARK 500 17 DT B 7 0.06 SIDE CHAIN
REMARK 500 17 DG C 14 0.06 SIDE CHAIN
REMARK 500 18 DG B 8 0.06 SIDE CHAIN
REMARK 500 18 DG C 14 0.06 SIDE CHAIN
REMARK 500 19 DG B 8 0.07 SIDE CHAIN
REMARK 500 19 DT D 19 0.09 SIDE CHAIN
REMARK 500 20 DG A 2 0.07 SIDE CHAIN
REMARK 500 20 DT D 19 0.06 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 2CHK RELATED DB: PDB
REMARK 900 NMR STRUCTURE OF TLLLLT QUADRUPLEX
DBREF 2CHJ A 1 6 PDB 2CHJ 2CHJ 1 6
DBREF 2CHJ B 7 12 PDB 2CHJ 2CHJ 7 12
DBREF 2CHJ C 13 18 PDB 2CHJ 2CHJ 13 18
DBREF 2CHJ D 19 24 PDB 2CHJ 2CHJ 19 24
SEQRES 1 A 6 DT DG LCG DG LCG DT
SEQRES 1 B 6 DT DG LCG DG LCG DT
SEQRES 1 C 6 DT DG LCG DG LCG DT
SEQRES 1 D 6 DT DG LCG DG LCG DT
MODRES 2CHJ LCG A 3 G LNA-GUANOSINE
MODRES 2CHJ LCG A 5 G LNA-GUANOSINE
MODRES 2CHJ LCG B 9 G LNA-GUANOSINE
MODRES 2CHJ LCG B 11 G LNA-GUANOSINE
MODRES 2CHJ LCG C 15 G LNA-GUANOSINE
MODRES 2CHJ LCG C 17 G LNA-GUANOSINE
MODRES 2CHJ LCG D 21 G LNA-GUANOSINE
MODRES 2CHJ LCG D 23 G LNA-GUANOSINE
HET LCG A 3 35
HET LCG A 5 35
HET LCG B 9 35
HET LCG B 11 35
HET LCG C 15 35
HET LCG C 17 35
HET LCG D 21 35
HET LCG D 23 35
HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-
HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL
HETNAM 3 LCG DIHYDROGEN PHOSPHATE
FORMUL 1 LCG 8(C11 H14 N5 O8 P)
LINK O3' DG A 2 P LCG A 3 1555 1555 1.61
LINK O3' LCG A 3 P DG A 4 1555 1555 1.61
LINK O3' DG A 4 P LCG A 5 1555 1555 1.62
LINK O3' LCG A 5 P DT A 6 1555 1555 1.63
LINK O3' DG B 8 P LCG B 9 1555 1555 1.61
LINK O3' LCG B 9 P DG B 10 1555 1555 1.61
LINK O3' DG B 10 P LCG B 11 1555 1555 1.62
LINK O3' LCG B 11 P DT B 12 1555 1555 1.63
LINK O3' DG C 14 P LCG C 15 1555 1555 1.61
LINK O3' LCG C 15 P DG C 16 1555 1555 1.61
LINK O3' DG C 16 P LCG C 17 1555 1555 1.62
LINK O3' LCG C 17 P DT C 18 1555 1555 1.63
LINK O3' DG D 20 P LCG D 21 1555 1555 1.61
LINK O3' LCG D 21 P DG D 22 1555 1555 1.61
LINK O3' DG D 22 P LCG D 23 1555 1555 1.62
LINK O3' LCG D 23 P DT D 24 1555 1555 1.63
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 25 2 Bytes