Header list of 2c6b.pdb file
Complete list - n 24 2 Bytes
HEADER LIGASE 08-NOV-05 2C6B
TITLE SOLUTION STRUCTURE OF THE C4 ZINC-FINGER DOMAIN OF HDM2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: UBIQUITIN-PROTEIN LIGASE E3 MDM2;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: HUMAN MDM2, P53-BINDING PROTEIN MDM2, ONCOPROTEIN MDM2,
COMPND 5 DOUBLE MINUTE 2 PROTEIN, HDM2;
COMPND 6 EC: 6.3.2.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR: MODIFIED PRSETA
KEYWDS ZINC FINGER, HUMAN MDM2, LIGASE, PHOSPHORYLATION, ALTERNATIVE
KEYWDS 2 SPLICING, METAL-BINDING, NUCLEAR PROTEIN, PROTO- ONCOGENE, UBL
KEYWDS 3 CONJUGATION PATHWAY, ZINC
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR G.W.YU,M.D.ALLEN,A.ANDREEVA,A.R.FERSHT,M.BYCROFT
REVDAT 4 24-JAN-18 2C6B 1 SOURCE
REVDAT 3 24-FEB-09 2C6B 1 VERSN
REVDAT 2 01-FEB-06 2C6B 1 JRNL
REVDAT 1 04-JAN-06 2C6B 0
JRNL AUTH G.W.YU,M.D.ALLEN,A.ANDREEVA,A.R.FERSHT,M.BYCROFT
JRNL TITL SOLUTION STRUCTURE OF THE C4 ZINC FINGER DOMAIN OF HDM2.
JRNL REF PROTEIN SCI. V. 15 384 2006
JRNL REFN ISSN 0961-8368
JRNL PMID 16385008
JRNL DOI 10.1110/PS.051927306
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE-
REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,
REMARK 3 SIMONSON,WARREN
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE
REMARK 3 JRNL CITATION ABOVE.
REMARK 4
REMARK 4 2C6B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-05.
REMARK 100 THE DEPOSITION ID IS D_1290026298.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293.0
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 100
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : ANSIG, AZARA, CNS
REMARK 210 METHOD USED : NULL
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 20
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS > 0.25A
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NONE
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400
REMARK 400 COMPOUND
REMARK 400 UBIQUITIN-PROTEIN LIGASE E3 MDM2 FUNCTIONS BY INHIBITING
REMARK 400 P53- AND P73-MEDIATED CELL CYCLE ARREST AND APOPTOSIS
REMARK 400 BY BINDING ITS TRANSCRIPTIONAL ACTIVATION DOMAIN.
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLU A 293 103.91 58.75
REMARK 500 1 GLU A 296 -72.16 -61.72
REMARK 500 1 TYR A 302 174.05 -50.92
REMARK 500 1 ASN A 309 63.99 62.67
REMARK 500 1 SER A 317 48.99 -81.50
REMARK 500 1 ARG A 321 -66.47 -98.28
REMARK 500 1 TRP A 323 70.09 67.00
REMARK 500 1 ARG A 326 173.33 -56.78
REMARK 500 2 PHE A 291 -78.54 -104.02
REMARK 500 2 GLU A 293 77.38 -157.38
REMARK 500 2 ASN A 309 62.28 60.62
REMARK 500 2 SER A 317 45.19 -91.11
REMARK 500 2 ARG A 321 -78.55 -88.12
REMARK 500 2 TRP A 323 62.47 62.22
REMARK 500 2 LEU A 325 140.11 63.79
REMARK 500 2 TRP A 329 -93.79 -139.97
REMARK 500 2 ASP A 333 62.08 -115.81
REMARK 500 3 GLU A 296 -82.45 60.68
REMARK 500 3 SER A 317 48.47 -90.30
REMARK 500 3 ARG A 321 -62.40 -99.01
REMARK 500 3 TRP A 323 61.19 61.67
REMARK 500 3 LEU A 325 137.89 63.65
REMARK 500 3 TRP A 329 -46.42 -145.69
REMARK 500 4 GLU A 293 -169.87 -59.26
REMARK 500 4 ASP A 294 -54.03 -174.41
REMARK 500 4 ILE A 297 154.31 60.25
REMARK 500 4 SER A 317 38.75 -93.54
REMARK 500 4 LEU A 325 144.90 66.39
REMARK 500 5 ASP A 294 57.57 -142.23
REMARK 500 5 ILE A 297 152.06 61.55
REMARK 500 5 TYR A 302 160.98 -49.84
REMARK 500 5 SER A 317 49.43 -86.31
REMARK 500 5 ARG A 321 -64.57 -93.81
REMARK 500 5 LEU A 325 139.94 67.44
REMARK 500 5 PRO A 331 -176.92 -55.41
REMARK 500 5 ASP A 333 91.93 -59.18
REMARK 500 5 LYS A 334 36.04 -147.88
REMARK 500 6 GLU A 292 169.95 58.37
REMARK 500 6 ILE A 297 153.84 60.37
REMARK 500 6 SER A 317 46.77 -80.65
REMARK 500 6 TRP A 323 64.85 74.48
REMARK 500 6 ARG A 326 168.76 -46.58
REMARK 500 7 ILE A 297 152.96 60.85
REMARK 500 7 TYR A 302 168.51 -48.47
REMARK 500 7 SER A 317 48.76 -80.38
REMARK 500 7 ARG A 321 -74.21 -92.15
REMARK 500 7 TRP A 323 73.51 66.99
REMARK 500 8 GLU A 292 42.13 -97.11
REMARK 500 8 ILE A 297 152.76 60.70
REMARK 500 8 TYR A 302 171.04 -51.69
REMARK 500
REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 336 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 305 SG
REMARK 620 2 CYS A 322 SG 98.3
REMARK 620 3 CYS A 308 SG 106.8 118.0
REMARK 620 4 CYS A 319 SG 116.7 116.8 100.8
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 336
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1RV1 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF HUMAN MDM2 WITH AN IMIDAZOLINEINHIBITOR
REMARK 900 RELATED ID: 1T4E RELATED DB: PDB
REMARK 900 STRUCTURE OF HUMAN MDM2 IN COMPLEX WITH A BENZODIAZEPINEINHIBITOR
REMARK 900 RELATED ID: 1T4F RELATED DB: PDB
REMARK 900 STRUCTURE OF HUMAN MDM2 IN COMPLEX WITH AN OPTIMIZED P53PEPTIDE
REMARK 900 RELATED ID: 1YCR RELATED DB: PDB
REMARK 900 MDM2 BOUND TO THE TRANSACTIVATION DOMAIN OF P53
REMARK 900 RELATED ID: 1Z1M RELATED DB: PDB
REMARK 900 NMR STRUCTURE OF UNLIGANDED MDM2
REMARK 900 RELATED ID: 2C6A RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF THE C4 ZINC-FINGER DOMAIN OF HDM2
DBREF 2C6B A 290 335 UNP Q00987 MDM2_HUMAN 290 335
SEQRES 1 A 46 SER PHE GLU GLU ASP PRO GLU ILE SER LEU ALA ASP TYR
SEQRES 2 A 46 TRP LYS CYS THR SER CYS ASN GLU MET ASN PRO PRO LEU
SEQRES 3 A 46 PRO SER HIS CYS ASN ARG CYS TRP ALA LEU ARG GLU ASN
SEQRES 4 A 46 TRP LEU PRO GLU ASP LYS GLY
HET ZN A 336 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
SHEET 1 AA 2 TRP A 303 LYS A 304 0
SHEET 2 AA 2 MET A 311 ASN A 312 -1 O ASN A 312 N TRP A 303
LINK ZN ZN A 336 SG CYS A 305 1555 1555 2.35
LINK ZN ZN A 336 SG CYS A 322 1555 1555 2.35
LINK ZN ZN A 336 SG CYS A 308 1555 1555 2.29
LINK ZN ZN A 336 SG CYS A 319 1555 1555 2.29
CISPEP 1 LEU A 315 PRO A 316 1 0.07
CISPEP 2 LEU A 315 PRO A 316 2 0.12
CISPEP 3 LEU A 315 PRO A 316 3 0.13
CISPEP 4 LEU A 315 PRO A 316 4 0.03
CISPEP 5 LEU A 315 PRO A 316 5 -0.03
CISPEP 6 LEU A 315 PRO A 316 6 -0.06
CISPEP 7 LEU A 315 PRO A 316 7 0.10
CISPEP 8 LEU A 315 PRO A 316 8 0.15
CISPEP 9 LEU A 315 PRO A 316 9 0.23
CISPEP 10 LEU A 315 PRO A 316 10 0.08
CISPEP 11 LEU A 315 PRO A 316 11 0.14
CISPEP 12 LEU A 315 PRO A 316 12 0.07
CISPEP 13 LEU A 315 PRO A 316 13 0.16
CISPEP 14 LEU A 315 PRO A 316 14 0.01
CISPEP 15 LEU A 315 PRO A 316 15 0.08
CISPEP 16 LEU A 315 PRO A 316 16 -0.07
CISPEP 17 LEU A 315 PRO A 316 17 -0.12
CISPEP 18 LEU A 315 PRO A 316 18 0.08
CISPEP 19 LEU A 315 PRO A 316 19 0.15
CISPEP 20 LEU A 315 PRO A 316 20 0.05
SITE 1 AC1 4 CYS A 305 CYS A 308 CYS A 319 CYS A 322
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - n 24 2 Bytes