Header list of 2c5z.pdb file
Complete list - y 9 2 Bytes
HEADER TRANSCRIPTION 03-NOV-05 2C5Z
TITLE STRUCTURE AND CTD BINDING OF THE SET2 SRI DOMAIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SET DOMAIN PROTEIN 2;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: SET2 RPB1 INTERACTING DOMAIN, RESIDUES 620-719;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: RESIDUES 1-4 IN THE CONSTRUCT USED FOR THE STRUCTURE
COMPND 7 DETERMINATION ARE FROM THE EXPRESSION VECTOR.
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 9D
KEYWDS SRI DOMAIN, RNA POLYMERASE II, TRANSCRIPTION, CTD, SET2 HISTONE
KEYWDS 2 METHYLTRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR E.VOJNIC,B.SIMON,B.D.STRAHL,M.SATTLER,P.CRAMER
REVDAT 4 09-MAY-18 2C5Z 1 JRNL REMARK
REVDAT 3 24-FEB-09 2C5Z 1 VERSN
REVDAT 2 18-JAN-06 2C5Z 1 JRNL
REVDAT 1 14-NOV-05 2C5Z 0
JRNL AUTH E.VOJNIC,B.SIMON,B.D.STRAHL,M.SATTLER,P.CRAMER
JRNL TITL STRUCTURE AND CARBOXYL-TERMINAL DOMAIN (CTD) BINDING OF THE
JRNL TITL 2 SET2 SRI DOMAIN THAT COUPLES HISTONE H3 LYS36 METHYLATION TO
JRNL TITL 3 TRANSCRIPTION.
JRNL REF J. BIOL. CHEM. V. 281 13 2006
JRNL REFN ISSN 0021-9258
JRNL PMID 16286474
JRNL DOI 10.1074/JBC.C500423200
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.1, ARIA 1.2
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE-
REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,
REMARK 3 SIMONSON,WARREN
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE NMR ENSEMBLE HAS BEEN REFINED IN A
REMARK 3 SHELL OF WATER MOLECULES. REFINEMENT DETAILS CAN BE FOUND IN THE
REMARK 3 JRNL CITATION ABOVE AND LINGE ET AL.
REMARK 4
REMARK 4 2C5Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-05.
REMARK 100 THE DEPOSITION ID IS D_1290026244.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 292.0
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSHATE, 200 MM
REMARK 210 SODIUM CHLORIDE
REMARK 210 PRESSURE : 1.0 ATM
REMARK 210 SAMPLE CONTENTS : 0.4-1MM 15N OR 15N/13C LABELLED
REMARK 210 PROTEIN, 90% WATER/ 10% D2O OR
REMARK 210 100 % D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRVIEW
REMARK 210 METHOD USED : ARIA
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: 3D_15N-SEPARATED_NOESY, 3D_13C-SEPARATED_NOESY, 3D_13C
REMARK 210 EDITED NOESY, 3D_15N EDITED NOESY, HNHA, 2 D NOESY
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-10
REMARK 465 RES C SSSEQI
REMARK 465 GLY A 616
REMARK 465 ALA A 617
REMARK 465 MET A 618
REMARK 465 GLY A 619
REMARK 465 LYS A 620
REMARK 465 THR A 621
REMARK 465 LEU A 715
REMARK 465 GLY A 716
REMARK 465 LEU A 717
REMARK 465 SER A 718
REMARK 465 SER A 719
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HZ2 TRP A 632 HD2 ARG A 680 1.23
REMARK 500 HZ3 LYS A 663 OD1 ASP A 664 1.57
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 6 PHE A 636 CE1 PHE A 636 CZ -0.123
REMARK 500 6 PHE A 636 CZ PHE A 636 CE2 0.134
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LYS A 646 74.00 -152.63
REMARK 500 1 LEU A 686 97.64 -64.22
REMARK 500 2 SER A 623 42.36 -84.44
REMARK 500 2 LYS A 646 80.00 -165.06
REMARK 500 3 LYS A 646 72.31 -170.30
REMARK 500 4 SER A 623 18.65 59.44
REMARK 500 4 LYS A 646 84.06 -165.68
REMARK 500 4 LEU A 686 95.23 -69.37
REMARK 500 5 LYS A 646 73.20 -175.52
REMARK 500 5 PRO A 648 -19.83 -47.40
REMARK 500 6 LYS A 646 85.42 -164.47
REMARK 500 7 LYS A 646 65.45 -179.16
REMARK 500 7 ASP A 684 -73.89 -49.69
REMARK 500 7 LEU A 686 97.13 -62.82
REMARK 500 8 LYS A 646 80.24 -167.14
REMARK 500 9 LYS A 646 81.96 -173.28
REMARK 500 10 LYS A 646 70.94 -172.19
REMARK 500 10 ASP A 684 -71.98 -58.21
REMARK 500 10 LEU A 686 95.49 -63.95
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 4 PHE A 653 0.06 SIDE CHAIN
REMARK 500 7 PHE A 639 0.07 SIDE CHAIN
REMARK 500 10 PHE A 653 0.07 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1E0N RELATED DB: PDB
REMARK 900 YJQ8WW DOMAIN FROM SACCHAROMYCES CEREVISAE
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 RESIDUES 1-4 IN THE CONSTRUCT USED FOR THE STRUCTURE
REMARK 999 DETERMINATION ARE FROM THE EXPRESSION VECTOR.
DBREF 2C5Z A 616 619 PDB 2C5Z 2C5Z 616 619
DBREF 2C5Z A 620 719 UNP P46995 SET2_YEAST 620 719
SEQRES 1 A 104 GLY ALA MET GLY LYS THR VAL SER GLN SER GLN ARG LEU
SEQRES 2 A 104 GLU HIS ASN TRP ASN LYS PHE PHE ALA SER PHE VAL PRO
SEQRES 3 A 104 ASN LEU ILE LYS LYS ASN PRO GLN SER LYS GLN PHE ASP
SEQRES 4 A 104 HIS GLU ASN ILE LYS GLN CYS ALA LYS ASP ILE VAL LYS
SEQRES 5 A 104 ILE LEU THR THR LYS GLU LEU LYS LYS ASP SER SER ARG
SEQRES 6 A 104 ALA PRO PRO ASP ASP LEU THR LYS GLY LYS ARG HIS LYS
SEQRES 7 A 104 VAL LYS GLU PHE ILE ASN SER TYR MET ASP LYS ILE ILE
SEQRES 8 A 104 LEU LYS LYS LYS GLN LYS LYS ALA LEU GLY LEU SER SER
HELIX 1 1 SER A 623 LYS A 646 1 24
HELIX 2 2 ASP A 654 ASP A 677 1 24
HELIX 3 3 THR A 687 LYS A 713 1 27
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - y 9 2 Bytes