Header list of 2bmt.pdb file
Complete list - c 25 2 Bytes
HEADER NEUROTOXIN 16-JUN-98 2BMT
TITLE SCORPION TOXIN BMTX2 FROM BUTHUS MARTENSII KARSCH, NMR, 25 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TOXIN BMTX2;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MESOBUTHUS MARTENSII;
SOURCE 3 ORGANISM_COMMON: CHINESE SCORPION;
SOURCE 4 ORGANISM_TAXID: 34649;
SOURCE 5 STRAIN: KARSCH
KEYWDS SCORPION, NEUROTOXIN, LARGE CONDUCTANCE POTASSIUM CHANNEL, VOLTAGE
KEYWDS 2 GATED POTASSIUM CHANNEL, BUTHUS MARTENSII
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR E.BLANC,R.ROMI-LEBRUN,O.BORNET,T.NAKAJIMA,H.DARBON
REVDAT 3 25-DEC-19 2BMT 1 REMARK SEQRES LINK
REVDAT 2 24-FEB-09 2BMT 1 VERSN
REVDAT 1 13-JAN-99 2BMT 0
JRNL AUTH E.BLANC,R.ROMI-LEBRUN,O.BORNET,T.NAKAJIMA,H.DARBON
JRNL TITL SOLUTION STRUCTURE OF TWO NEW TOXINS FROM THE VENOM OF THE
JRNL TITL 2 CHINESE SCORPION BUTHUS MARTENSI KARSCH BLOCKERS OF
JRNL TITL 3 POTASSIUM CHANNELS.
JRNL REF BIOCHEMISTRY V. 37 12412 1998
JRNL REFN ISSN 0006-2960
JRNL PMID 9730813
JRNL DOI 10.1021/BI9809371
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.84
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: 10,000 ITERATIONS OF THE POWELL
REMARK 3 ALGORITHM WITH CHARMM FORCE FIELD
REMARK 4
REMARK 4 2BMT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000177841.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 300
REMARK 210 PH : 3
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : WATER
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : DRX500
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : DIANA, DYANA
REMARK 210 METHOD USED : DISTANCE GEOMETRY
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 25
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25
REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.7 DEGREES
REMARK 500 1 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 7.8 DEGREES
REMARK 500 1 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.7 DEGREES
REMARK 500 1 CYS A 17 CA - CB - SG ANGL. DEV. = 7.7 DEGREES
REMARK 500 2 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.6 DEGREES
REMARK 500 2 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 7.9 DEGREES
REMARK 500 2 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.7 DEGREES
REMARK 500 2 CYS A 17 CA - CB - SG ANGL. DEV. = 7.6 DEGREES
REMARK 500 3 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.8 DEGREES
REMARK 500 3 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 7.8 DEGREES
REMARK 500 3 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.8 DEGREES
REMARK 500 3 CYS A 17 CA - CB - SG ANGL. DEV. = 8.7 DEGREES
REMARK 500 4 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.6 DEGREES
REMARK 500 4 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 8.0 DEGREES
REMARK 500 4 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.5 DEGREES
REMARK 500 4 CYS A 17 CA - CB - SG ANGL. DEV. = 10.1 DEGREES
REMARK 500 5 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.7 DEGREES
REMARK 500 5 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 7.8 DEGREES
REMARK 500 5 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.7 DEGREES
REMARK 500 5 CYS A 17 CA - CB - SG ANGL. DEV. = 7.6 DEGREES
REMARK 500 6 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.6 DEGREES
REMARK 500 6 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 7.9 DEGREES
REMARK 500 6 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.6 DEGREES
REMARK 500 6 CYS A 17 CA - CB - SG ANGL. DEV. = 6.7 DEGREES
REMARK 500 7 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.4 DEGREES
REMARK 500 7 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 7.8 DEGREES
REMARK 500 7 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.5 DEGREES
REMARK 500 7 CYS A 17 CA - CB - SG ANGL. DEV. = 8.8 DEGREES
REMARK 500 8 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.8 DEGREES
REMARK 500 8 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 7.9 DEGREES
REMARK 500 8 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.7 DEGREES
REMARK 500 8 CYS A 17 CA - CB - SG ANGL. DEV. = 9.4 DEGREES
REMARK 500 9 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.7 DEGREES
REMARK 500 9 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 8.1 DEGREES
REMARK 500 9 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 8.0 DEGREES
REMARK 500 9 CYS A 17 CA - CB - SG ANGL. DEV. = 8.1 DEGREES
REMARK 500 10 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.8 DEGREES
REMARK 500 10 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 8.0 DEGREES
REMARK 500 10 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.8 DEGREES
REMARK 500 10 CYS A 17 CA - CB - SG ANGL. DEV. = 7.7 DEGREES
REMARK 500 11 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.7 DEGREES
REMARK 500 11 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 7.9 DEGREES
REMARK 500 11 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.8 DEGREES
REMARK 500 11 CYS A 17 CA - CB - SG ANGL. DEV. = 9.3 DEGREES
REMARK 500 12 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.8 DEGREES
REMARK 500 12 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 7.8 DEGREES
REMARK 500 12 TRP A 14 NE1 - CE2 - CZ2 ANGL. DEV. = 7.7 DEGREES
REMARK 500 12 CYS A 17 CA - CB - SG ANGL. DEV. = 10.2 DEGREES
REMARK 500 13 TRP A 14 CG - CD1 - NE1 ANGL. DEV. = -6.8 DEGREES
REMARK 500 13 TRP A 14 CD1 - NE1 - CE2 ANGL. DEV. = 7.9 DEGREES
REMARK 500
REMARK 500 THIS ENTRY HAS 99 ANGLE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ALA A 9 166.95 130.14
REMARK 500 1 ARG A 25 75.75 -118.20
REMARK 500 1 ASN A 30 54.57 39.05
REMARK 500 1 SER A 31 41.44 38.40
REMARK 500 1 TYR A 36 -169.79 -128.16
REMARK 500 2 ALA A 9 173.58 121.46
REMARK 500 2 ARG A 25 71.20 -111.39
REMARK 500 3 ALA A 9 174.08 123.77
REMARK 500 3 SER A 31 33.22 37.61
REMARK 500 4 ALA A 9 168.87 123.16
REMARK 500 4 SER A 31 30.99 38.89
REMARK 500 5 ALA A 9 164.97 133.81
REMARK 500 5 ARG A 25 68.18 -115.34
REMARK 500 5 SER A 31 24.48 45.92
REMARK 500 5 TYR A 36 -64.77 -125.11
REMARK 500 6 ALA A 9 155.85 124.60
REMARK 500 6 TYR A 24 35.32 -97.75
REMARK 500 6 TYR A 36 -169.06 -125.40
REMARK 500 7 ALA A 9 169.11 124.79
REMARK 500 7 ARG A 25 71.42 -114.00
REMARK 500 7 SER A 31 28.58 45.64
REMARK 500 8 ALA A 9 171.98 125.84
REMARK 500 8 SER A 31 28.29 44.38
REMARK 500 8 TYR A 36 -64.36 -108.74
REMARK 500 9 ALA A 9 161.07 133.35
REMARK 500 10 ALA A 9 159.96 122.15
REMARK 500 11 ALA A 9 162.27 124.22
REMARK 500 11 ARG A 25 77.87 -117.95
REMARK 500 12 ALA A 9 164.68 135.39
REMARK 500 12 TYR A 36 -59.55 -123.61
REMARK 500 13 ALA A 9 171.08 125.06
REMARK 500 13 ARG A 25 76.97 -103.98
REMARK 500 14 ALA A 9 173.75 121.69
REMARK 500 14 ASN A 30 61.44 36.01
REMARK 500 14 SER A 31 31.77 39.93
REMARK 500 14 TYR A 36 -51.20 -122.48
REMARK 500 15 ALA A 9 162.95 124.24
REMARK 500 15 ASN A 30 58.54 38.18
REMARK 500 15 SER A 31 36.62 39.38
REMARK 500 16 ALA A 9 167.64 126.51
REMARK 500 16 ASN A 30 57.02 39.41
REMARK 500 16 SER A 31 35.24 37.81
REMARK 500 17 ALA A 9 164.50 126.15
REMARK 500 17 ARG A 25 77.39 -118.94
REMARK 500 17 SER A 31 29.35 43.63
REMARK 500 18 ALA A 9 162.21 122.64
REMARK 500 18 ARG A 25 73.06 -117.28
REMARK 500 18 SER A 31 35.80 36.61
REMARK 500 19 ALA A 9 163.99 129.37
REMARK 500 19 ARG A 25 65.43 -113.17
REMARK 500
REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 25 0.32 SIDE CHAIN
REMARK 500 1 ARG A 34 0.27 SIDE CHAIN
REMARK 500 2 ARG A 25 0.31 SIDE CHAIN
REMARK 500 2 ARG A 34 0.31 SIDE CHAIN
REMARK 500 3 ARG A 25 0.31 SIDE CHAIN
REMARK 500 3 ARG A 34 0.21 SIDE CHAIN
REMARK 500 4 ARG A 25 0.27 SIDE CHAIN
REMARK 500 4 ARG A 34 0.31 SIDE CHAIN
REMARK 500 5 ARG A 25 0.30 SIDE CHAIN
REMARK 500 5 ARG A 34 0.30 SIDE CHAIN
REMARK 500 6 ARG A 25 0.30 SIDE CHAIN
REMARK 500 6 ARG A 34 0.32 SIDE CHAIN
REMARK 500 7 ARG A 25 0.32 SIDE CHAIN
REMARK 500 7 ARG A 34 0.28 SIDE CHAIN
REMARK 500 8 ARG A 25 0.31 SIDE CHAIN
REMARK 500 8 ARG A 34 0.31 SIDE CHAIN
REMARK 500 9 ARG A 25 0.31 SIDE CHAIN
REMARK 500 9 ARG A 34 0.31 SIDE CHAIN
REMARK 500 10 ARG A 25 0.31 SIDE CHAIN
REMARK 500 10 ARG A 34 0.25 SIDE CHAIN
REMARK 500 11 ARG A 25 0.31 SIDE CHAIN
REMARK 500 11 ARG A 34 0.25 SIDE CHAIN
REMARK 500 12 ARG A 25 0.32 SIDE CHAIN
REMARK 500 12 ARG A 34 0.15 SIDE CHAIN
REMARK 500 13 ARG A 25 0.22 SIDE CHAIN
REMARK 500 13 ARG A 34 0.15 SIDE CHAIN
REMARK 500 14 ARG A 25 0.31 SIDE CHAIN
REMARK 500 14 ARG A 34 0.23 SIDE CHAIN
REMARK 500 15 ARG A 25 0.28 SIDE CHAIN
REMARK 500 15 ARG A 34 0.30 SIDE CHAIN
REMARK 500 16 ARG A 25 0.27 SIDE CHAIN
REMARK 500 16 ARG A 34 0.21 SIDE CHAIN
REMARK 500 17 ARG A 25 0.31 SIDE CHAIN
REMARK 500 17 ARG A 34 0.20 SIDE CHAIN
REMARK 500 18 ARG A 25 0.30 SIDE CHAIN
REMARK 500 18 ARG A 34 0.30 SIDE CHAIN
REMARK 500 19 ARG A 25 0.26 SIDE CHAIN
REMARK 500 19 ARG A 34 0.20 SIDE CHAIN
REMARK 500 20 ARG A 25 0.32 SIDE CHAIN
REMARK 500 20 ARG A 34 0.30 SIDE CHAIN
REMARK 500 21 ARG A 25 0.30 SIDE CHAIN
REMARK 500 21 ARG A 34 0.23 SIDE CHAIN
REMARK 500 22 ARG A 25 0.31 SIDE CHAIN
REMARK 500 22 ARG A 34 0.31 SIDE CHAIN
REMARK 500 23 ARG A 25 0.17 SIDE CHAIN
REMARK 500 23 ARG A 34 0.29 SIDE CHAIN
REMARK 500 24 ARG A 25 0.30 SIDE CHAIN
REMARK 500 24 ARG A 34 0.31 SIDE CHAIN
REMARK 500 25 ARG A 25 0.31 SIDE CHAIN
REMARK 500 25 ARG A 34 0.31 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF 2BMT A 2 37 UNP Q9NII5 SCK2_MESMA 23 58
SEQRES 1 A 37 PCA PHE THR ASN VAL SER CYS SER ALA SER SER GLN CYS
SEQRES 2 A 37 TRP PRO VAL CYS LYS LYS LEU PHE GLY THR TYR ARG GLY
SEQRES 3 A 37 LYS CYS MET ASN SER LYS CYS ARG CYS TYR SER
MODRES 2BMT PCA A 1 GLN PYROGLUTAMIC ACID
HET PCA A 1 14
HETNAM PCA PYROGLUTAMIC ACID
FORMUL 1 PCA C5 H7 N O3
HELIX 1 1 SER A 11 LEU A 20 1 10
SHEET 1 A 2 GLY A 26 MET A 29 0
SHEET 2 A 2 LYS A 32 CYS A 35 -1 N ARG A 34 O LYS A 27
SSBOND 1 CYS A 7 CYS A 28 1555 1555 2.02
SSBOND 2 CYS A 13 CYS A 33 1555 1555 2.02
SSBOND 3 CYS A 17 CYS A 35 1555 1555 2.02
LINK C PCA A 1 N PHE A 2 1555 1555 1.28
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - c 25 2 Bytes