Header list of 2bgo.pdb file
Complete list - 9 20 Bytes
HEADER CARBOHYDRATE BINDING PROTEIN 04-JAN-05 2BGO
TITLE MANNAN BINDING MODULE FROM MAN5C
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ENDO-B1,4-MANNANASE 5C;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 197-328;
COMPND 5 SYNONYM: CBM35 FROM BETA-1,4-MANNANASE MAN5C;
COMPND 6 ENGINEERED: YES;
COMPND 7 OTHER_DETAILS: MANNAN SPECIFIC CARBOHYDRATE BINDING MODULE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO JAPONICUS;
SOURCE 3 ORGANISM_TAXID: 155077;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM83 (DE3);
SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET22B;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGP1
KEYWDS CARBOHYDRATE BINDING PROTEIN, MANNAN, CARBOHYDRATE BINDING MODULE
EXPDTA SOLUTION NMR
NUMMDL 5
AUTHOR R.B.TUNNICLIFFE,D.N.BOLAM,G.PELL,H.J.GILBERT,M.P.WILLIAMSON
REVDAT 4 14-JUN-23 2BGO 1 REMARK
REVDAT 3 15-JAN-20 2BGO 1 REMARK
REVDAT 2 24-FEB-09 2BGO 1 VERSN
REVDAT 1 09-MAR-05 2BGO 0
JRNL AUTH R.B.TUNNICLIFFE,D.N.BOLAM,G.PELL,H.J.GILBERT,M.P.WILLIAMSON
JRNL TITL STRUCTURE OF A MANNAN-SPECIFIC FAMILY 35
JRNL TITL 2 CARBOHYDRATE-BINDING MODULE: EVIDENCE FOR SIGNIFICANT
JRNL TITL 3 CONFORMATIONAL CHANGES UPON LIGAND BINDING
JRNL REF J.MOL.BIOL. V. 347 287 2005
JRNL REFN ISSN 0022-2836
JRNL PMID 15740741
JRNL DOI 10.1016/J.JMB.2005.01.038
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE-
REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,
REMARK 3 SIMONSON,WARREN
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2BGO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JAN-05.
REMARK 100 THE DEPOSITION ID IS D_1290022143.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298.0
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : 50MM SODIUM PHOSPHATE, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : TRIPLE RESONANCE EXPERIMENTS;
REMARK 210 HNHA; 15N; 13C-EDITED NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : FELIX, CNS
REMARK 210 METHOD USED : NULL
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 80
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5
REMARK 210 CONFORMERS, SELECTION CRITERIA : RANDOM 5 STRUCTURES FROM 20
REMARK 210 LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NONE
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-5
REMARK 465 RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 VAL A 3
REMARK 465 PRO A 4
REMARK 465 GLU A 5
REMARK 465 GLY A 6
REMARK 465 ASN A 7
REMARK 465 GLY A 124
REMARK 465 LEU A 125
REMARK 465 THR A 126
REMARK 465 ILE A 127
REMARK 465 ARG A 128
REMARK 465 SER A 129
REMARK 465 PRO A 130
REMARK 465 ALA A 131
REMARK 465 ASN A 132
REMARK 465 LEU A 133
REMARK 465 GLU A 134
REMARK 465 HIS A 135
REMARK 465 HIS A 136
REMARK 465 HIS A 137
REMARK 465 HIS A 138
REMARK 465 HIS A 139
REMARK 465 HIS A 140
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H ILE A 52 O GLN A 89 1.55
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ALA A 34 157.46 -47.21
REMARK 500 1 PRO A 59 90.18 -64.44
REMARK 500 1 TYR A 60 -77.75 -143.33
REMARK 500 1 SER A 61 -63.08 178.39
REMARK 500 1 SER A 62 121.28 -172.82
REMARK 500 1 ALA A 73 74.02 -100.31
REMARK 500 1 PHE A 78 93.83 -58.54
REMARK 500 1 GLU A 80 101.59 -37.51
REMARK 500 1 THR A 82 -48.92 -160.46
REMARK 500 1 PRO A 84 83.56 -35.35
REMARK 500 1 TYR A 111 79.20 -176.61
REMARK 500 2 GLN A 32 -156.32 -123.59
REMARK 500 2 ALA A 34 158.14 -39.22
REMARK 500 2 TYR A 60 -86.89 -144.39
REMARK 500 2 SER A 61 64.89 155.51
REMARK 500 2 SER A 62 111.75 69.69
REMARK 500 2 ALA A 73 74.46 -106.84
REMARK 500 2 PHE A 78 101.38 -48.22
REMARK 500 2 GLU A 80 108.94 -38.00
REMARK 500 2 THR A 82 -51.50 -122.18
REMARK 500 2 PRO A 84 86.50 -45.47
REMARK 500 2 TYR A 87 99.94 -67.46
REMARK 500 2 TRP A 109 153.12 -47.99
REMARK 500 2 TYR A 111 58.14 163.60
REMARK 500 2 SER A 116 151.94 175.74
REMARK 500 2 LEU A 121 90.04 -52.73
REMARK 500 2 LEU A 122 163.03 -46.03
REMARK 500 3 ASN A 27 36.16 70.10
REMARK 500 3 ALA A 37 103.70 -169.28
REMARK 500 3 SER A 57 84.74 -152.19
REMARK 500 3 PRO A 59 91.27 -64.05
REMARK 500 3 TYR A 60 -76.40 -140.92
REMARK 500 3 SER A 61 -32.80 173.28
REMARK 500 3 SER A 62 143.37 162.61
REMARK 500 3 PHE A 78 176.08 -50.79
REMARK 500 3 THR A 82 -49.78 -151.17
REMARK 500 3 PRO A 84 84.45 -36.85
REMARK 500 3 ASP A 108 -67.53 -101.80
REMARK 500 3 TRP A 109 133.72 79.01
REMARK 500 3 TYR A 111 75.55 168.80
REMARK 500 3 LEU A 122 89.83 48.85
REMARK 500 4 PRO A 21 2.72 -69.67
REMARK 500 4 ALA A 37 113.66 -162.75
REMARK 500 4 SER A 57 72.88 -152.62
REMARK 500 4 TYR A 60 -82.80 -126.31
REMARK 500 4 SER A 61 -32.59 178.85
REMARK 500 4 SER A 62 130.10 157.88
REMARK 500 4 ALA A 73 74.72 -109.56
REMARK 500 4 GLU A 80 38.48 -89.13
REMARK 500 4 ALA A 81 172.41 -51.14
REMARK 500
REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 2BGP RELATED DB: PDB
REMARK 900 MANNAN BINDING MODULE FROM MAN5C IN BOUND CONFORMATION
REMARK 900 RELATED ID: 6475 RELATED DB: BMRB
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 PROTEIN SEQUENCE STARTS AT RESIDUE 204 OF FULL LENGTH
REMARK 999 PROTEIN. ACTUAL PROTEIN SAMPLE CONTAINED RESIDUES 197-328
REMARK 999 PLUS HIS-TAG SEQUENCE LEHHHHHH AT C-TERMINUS.
DBREF 2BGO A 1 132 UNP Q840C0 Q840C0 197 328
DBREF 2BGO A 133 140 PDB 2BGO 2BGO 133 140
SEQRES 1 A 140 MET ALA VAL PRO GLU GLY ASN SER TRP THR TYR THR ALA
SEQRES 2 A 140 ALA SER ALA SER ILE THR ALA PRO ALA GLN LEU VAL GLY
SEQRES 3 A 140 ASN VAL GLY GLU LEU GLN GLY ALA GLY SER ALA VAL ILE
SEQRES 4 A 140 TRP ASN VAL ASP VAL PRO VAL THR GLY GLU TYR ARG ILE
SEQRES 5 A 140 ASN LEU THR TRP SER SER PRO TYR SER SER LYS VAL ASN
SEQRES 6 A 140 THR LEU VAL MET ASP GLY THR ALA LEU SER TYR ALA PHE
SEQRES 7 A 140 ALA GLU ALA THR VAL PRO VAL THR TYR VAL GLN THR LYS
SEQRES 8 A 140 THR LEU SER ALA GLY ASN HIS SER PHE GLY VAL ARG VAL
SEQRES 9 A 140 GLY SER SER ASP TRP GLY TYR MET ASN VAL HIS SER LEU
SEQRES 10 A 140 LYS LEU GLU LEU LEU GLY GLY LEU THR ILE ARG SER PRO
SEQRES 11 A 140 ALA ASN LEU GLU HIS HIS HIS HIS HIS HIS
HELIX 1 1 ALA A 13 SER A 15 5 3
SHEET 1 AA 4 SER A 8 THR A 12 0
SHEET 2 AA 4 SER A 116 GLY A 123 -1 O LEU A 117 N TYR A 11
SHEET 3 AA 4 THR A 47 TRP A 56 -1 O ARG A 51 N GLU A 120
SHEET 4 AA 4 VAL A 85 ALA A 95 -1 O VAL A 85 N TRP A 56
SHEET 1 AB 5 ALA A 16 THR A 19 0
SHEET 2 AB 5 ALA A 37 VAL A 44 -1 O ALA A 37 N THR A 19
SHEET 3 AB 5 GLY A 96 VAL A 104 -1 O GLY A 96 N VAL A 44
SHEET 4 AB 5 SER A 62 ASP A 70 -1 O THR A 66 N ARG A 103
SHEET 5 AB 5 THR A 72 GLU A 80 -1 O THR A 72 N MET A 69
SHEET 1 AC 3 GLN A 23 GLY A 26 0
SHEET 2 AC 3 VAL A 28 GLN A 32 -1 O GLU A 30 N GLN A 23
SHEET 3 AC 3 TYR A 111 HIS A 115 -1 O MET A 112 N LEU A 31
CISPEP 1 ALA A 20 PRO A 21 1 0.56
CISPEP 2 ALA A 20 PRO A 21 2 0.44
CISPEP 3 ALA A 20 PRO A 21 3 0.47
CISPEP 4 ALA A 20 PRO A 21 4 0.63
CISPEP 5 ALA A 20 PRO A 21 5 0.49
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 9 20 Bytes