Header list of 2au4.pdb file
Complete list - 9 20 Bytes
HEADER RNA 26-AUG-05 2AU4
TITLE CLASS I GTP APTAMER
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CLASS I RNA APTAMER TO GTP;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: IN VITRO SELECTION
KEYWDS RNA, APTAMER
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR J.M.CAROTHERS,J.H.DAVIS,J.J.CHOU,J.W.SZOSTAK
REVDAT 4 09-MAR-22 2AU4 1 REMARK
REVDAT 3 24-FEB-09 2AU4 1 VERSN
REVDAT 2 18-APR-06 2AU4 1 JRNL
REVDAT 1 28-MAR-06 2AU4 0
JRNL AUTH J.M.CAROTHERS,J.H.DAVIS,J.J.CHOU,J.W.SZOSTAK
JRNL TITL SOLUTION STRUCTURE OF AN INFORMATIONALLY COMPLEX
JRNL TITL 2 HIGH-AFFINITY RNA APTAMER TO GTP.
JRNL REF RNA V. 12 567 2006
JRNL REFN ISSN 1355-8382
JRNL PMID 16510427
JRNL DOI 10.1261/RNA.2251306
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : NMRPIPE 2.3, XPLOR-NIH 2.9.2
REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), CLORE, TJANDRA, SCHWIETERS,
REMARK 3 KUSZEWSKI (XPLOR-NIH)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF 434
REMARK 3 RESTRAINTS
REMARK 4
REMARK 4 2AU4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-05.
REMARK 100 THE DEPOSITION ID IS D_1000034313.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 288; 303; 298; 303
REMARK 210 PH : 6.1; 6.1; 6.1; 6.8
REMARK 210 IONIC STRENGTH : 5 MM MGCL2, 75 MM KCL; 5 MM
REMARK 210 MGCL2, 75 MM KCL; 5 MM MGCL2, 75
REMARK 210 MM KCL; 5 MM MGCL2, 75 MM KCL
REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT;
REMARK 210 AMBIENT
REMARK 210 SAMPLE CONTENTS : 3.3 MM CLASS I APTAMER U-15N,
REMARK 210 13C, 3.63 MM GTP LIGAND NA, 10 %
REMARK 210 PHOSPHATE BUFFER NA, 99% D2O;
REMARK 210 0.9 MM CLASS I APTAMER NA, 0.99
REMARK 210 NM GTP LIGAND U-15N, 13C, 10 %
REMARK 210 PHOSPATE BUFFER NA, 99% D2O; 3.3
REMARK 210 MM CLASS I APTAMER U-15N, 13C;
REMARK 210 3.63 MM GTP LIGAND NA; 10 %
REMARK 210 PHOSPHATE BUFFER NA, 95% H2O, 5%
REMARK 210 D2O; 0.9 MM CLASS I APTAMER NA;
REMARK 210 0.99 NM GTP LIGAND U-15N, 13C;
REMARK 210 10 % PHOSPATE BUFFER NA, 95% H2O,
REMARK 210 5% D2O; 0.8 MM CLASS I RNA
REMARK 210 APTAMER U-15N,13C, 0.9 MM GTP NA,
REMARK 210 10% PHOSPHATE BUFFER NA, 95%
REMARK 210 H2O, 5% D2O; 0.5 MM CLASS I RNA
REMARK 210 APTAMER U-15N,13C, 0.55 MM GTP
REMARK 210 NA, 18 ML/MG PF1 PHAGE NA, 10%
REMARK 210 PHOSPHATE BUFFER NA, 95% H2O, 5%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; 2D NOESY; DQF-
REMARK 210 COSY; 2D 1H DECOUPLED 13C-1H CT
REMARK 210 HSQC; 2D 13C-1H CT-TROSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ; 400 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA; UNITY; AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XPLOR-NIH 2.9.2, SPARKY 3
REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H21 G A 31 O6 GTP A 42 1.43
REMARK 500 HO2' G A 24 O5' G A 25 1.47
REMARK 500 O2' A A 8 HO2' GTP A 42 1.47
REMARK 500 H1 G A 17 O2 U A 28 1.52
REMARK 500 N3 A A 8 H21 G A 11 1.54
REMARK 500 H3 U A 14 N1 A A 33 1.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 G A 1 C3' - C2' - C1' ANGL. DEV. = 4.8 DEGREES
REMARK 500 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 G A 6 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 6 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 A A 7 C3' - C2' - C1' ANGL. DEV. = 4.8 DEGREES
REMARK 500 A A 7 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES
REMARK 500 A A 8 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES
REMARK 500 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 U A 10 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES
REMARK 500 G A 11 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES
REMARK 500 G A 11 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 G A 12 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES
REMARK 500 G A 12 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 12 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 U A 14 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES
REMARK 500 G A 15 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 15 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 G A 17 C3' - C2' - C1' ANGL. DEV. = 4.8 DEGREES
REMARK 500 G A 17 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 17 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 G A 19 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES
REMARK 500 G A 19 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 U A 22 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES
REMARK 500 G A 24 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES
REMARK 500 G A 24 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 24 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 G A 25 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 25 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 G A 27 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 27 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 U A 28 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES
REMARK 500 G A 29 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES
REMARK 500 G A 29 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES
REMARK 500 G A 29 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 U A 30 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES
REMARK 500 G A 31 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES
REMARK 500 G A 31 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 31 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 A A 32 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES
REMARK 500 A A 32 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES
REMARK 500 A A 33 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES
REMARK 500
REMARK 500 THIS ENTRY HAS 58 ANGLE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 42
DBREF 2AU4 A 1 41 PDB 2AU4 2AU4 1 41
SEQRES 1 A 41 G G G A C G A A G U G G U
SEQRES 2 A 41 U G G G C G C U U C G G C
SEQRES 3 A 41 G U G U G A A A A C G U C
SEQRES 4 A 41 C C
HET GTP A 42 45
HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE
FORMUL 2 GTP C10 H16 N5 O14 P3
SITE 1 AC1 7 A A 8 G A 9 G A 11 G A 15
SITE 2 AC1 7 G A 16 G A 31 A A 32
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 9 20 Bytes