Header list of 2ai5.pdb file
Complete list - r 9 2 Bytes
HEADER ELECTRON TRANSPORT 29-JUL-05 2AI5
TITLE SOLUTION STRUCTURE OF CYTOCHROME C552, DETERMINED BY DISTRIBUTED
TITLE 2 COMPUTING IMPLEMENTATION FOR NMR DATA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYTOCHROME C-552;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: CYTOCHROME C552
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HYDROGENOBACTER THERMOPHILUS;
SOURCE 3 ORGANISM_TAXID: 940;
SOURCE 4 STRAIN: TK-6
KEYWDS CYTOCHROME C, ELECTRON TRANSPORT, PORPHYRIN, FERROUS IRON
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.NAKAMURA,S.I.ICHIKI,H.TAKASHIMA,S.UCHIYAMA,J.HASEGAWA,Y.KOBAYASHI,
AUTHOR 2 Y.SAMBONGI,T.OHKUBO
REVDAT 3 09-MAR-22 2AI5 1 REMARK LINK
REVDAT 2 24-FEB-09 2AI5 1 VERSN
REVDAT 1 23-MAY-06 2AI5 0
JRNL AUTH S.NAKAMURA,S.I.ICHIKI,H.TAKASHIMA,S.UCHIYAMA,J.HASEGAWA,
JRNL AUTH 2 Y.KOBAYASHI,Y.SAMBONGI,T.OHKUBO
JRNL TITL STRUCTURE OF CYTOCHROME C552 FROM A MODERATE THERMOPHILIC
JRNL TITL 2 BACTERIUM, HYDROGENOPHILUS THERMOLUTEOLUS: COMPARATIVE STUDY
JRNL TITL 3 ON THE THERMOSTABILITY OF CYTOCHROME C
JRNL REF BIOCHEMISTRY V. 45 6115 2006
JRNL REFN ISSN 0006-2960
JRNL PMID 16681384
JRNL DOI 10.1021/BI0520131
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR XPLOR-NIH V2.0.6, X-PLOR XPLOR-NIH V2.0.6
REMARK 3 AUTHORS : SCHWIETERS, C. D. (X-PLOR), SCHWIETERS, C. D. (X
REMARK 3 -PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: DISTRIBUTED COMPUTING
REMARK 4
REMARK 4 2AI5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-05.
REMARK 100 THE DEPOSITION ID IS D_1000033923.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 4.8
REMARK 210 IONIC STRENGTH : 120MM ACETATE BUFFER
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 2MM CYTOCHROME C-552
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ
REMARK 210 SPECTROMETER MODEL : DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 4000
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE 1H-NMR DATA WERE SUBJECTED TO THE STRUCTURE
REMARK 210 DETERMINATION USING DISTRIBUTED COMPUTING IMPLEMENTATIONS.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLU A 2 -67.53 68.20
REMARK 500 1 CYS A 13 -37.05 -136.44
REMARK 500 1 ASP A 15 125.47 176.55
REMARK 500 1 LYS A 19 85.39 -55.51
REMARK 500 1 LYS A 20 -143.47 -96.63
REMARK 500 1 LEU A 42 -74.66 -43.21
REMARK 500 1 SER A 51 -170.30 169.92
REMARK 500 1 VAL A 57 102.66 -42.19
REMARK 500 1 PRO A 58 87.50 -60.80
REMARK 500 1 ASN A 63 72.75 -103.81
REMARK 500 2 CYS A 13 -34.15 -132.27
REMARK 500 2 ASP A 15 124.96 169.39
REMARK 500 2 ALA A 18 45.75 -147.73
REMARK 500 2 LYS A 19 94.22 -42.40
REMARK 500 2 LYS A 20 -89.71 -89.73
REMARK 500 2 LEU A 42 -73.98 -43.08
REMARK 500 2 SER A 51 -175.82 169.76
REMARK 500 2 SER A 56 54.40 -110.09
REMARK 500 2 PRO A 58 88.74 -60.51
REMARK 500 2 ASN A 63 62.10 -104.82
REMARK 500 3 CYS A 13 -36.03 -135.95
REMARK 500 3 ASP A 15 124.08 172.73
REMARK 500 3 LYS A 19 78.36 -60.31
REMARK 500 3 LYS A 20 -141.68 -88.42
REMARK 500 3 ASP A 37 34.26 -88.41
REMARK 500 3 LEU A 42 -73.66 -43.01
REMARK 500 3 SER A 51 -170.09 169.75
REMARK 500 3 PRO A 58 87.14 -60.86
REMARK 500 3 ASN A 63 57.05 -104.40
REMARK 500 4 ASP A 15 123.28 169.06
REMARK 500 4 ALA A 18 45.50 -148.30
REMARK 500 4 LYS A 19 93.64 -43.87
REMARK 500 4 LYS A 20 -89.87 -91.60
REMARK 500 4 LEU A 42 -73.99 -43.24
REMARK 500 4 SER A 51 177.05 169.69
REMARK 500 4 SER A 56 57.39 -108.05
REMARK 500 4 PRO A 58 78.08 -60.61
REMARK 500 4 ASN A 63 69.10 -104.09
REMARK 500 5 GLU A 2 -55.84 -175.69
REMARK 500 5 ASP A 15 122.88 170.66
REMARK 500 5 LYS A 19 86.57 -55.24
REMARK 500 5 LYS A 20 -147.48 -95.01
REMARK 500 5 LEU A 42 -73.90 -43.52
REMARK 500 5 SER A 51 -170.87 169.92
REMARK 500 5 SER A 56 65.34 -107.89
REMARK 500 5 PRO A 58 87.55 -60.59
REMARK 500 5 ASN A 63 64.08 -104.83
REMARK 500 6 GLN A 3 -84.22 -51.09
REMARK 500 6 CYS A 13 -36.82 -135.76
REMARK 500 6 HIS A 14 -178.84 -69.47
REMARK 500
REMARK 500 THIS ENTRY HAS 189 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEC A 81 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 14 NE2
REMARK 620 2 HEC A 81 NA 88.1
REMARK 620 3 HEC A 81 NB 89.4 90.1
REMARK 620 4 HEC A 81 NC 91.0 179.0 90.0
REMARK 620 5 HEC A 81 ND 89.6 90.3 179.0 89.6
REMARK 620 6 MET A 59 SD 174.5 86.4 90.6 94.6 90.4
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 81
DBREF 2AI5 A 1 80 UNP P15452 CY552_HYDTH 19 98
SEQRES 1 A 80 ASN GLU GLN LEU ALA LYS GLN LYS GLY CYS MET ALA CYS
SEQRES 2 A 80 HIS ASP LEU LYS ALA LYS LYS VAL GLY PRO ALA TYR ALA
SEQRES 3 A 80 ASP VAL ALA LYS LYS TYR ALA GLY ARG LYS ASP ALA VAL
SEQRES 4 A 80 ASP TYR LEU ALA GLY LYS ILE LYS LYS GLY GLY SER GLY
SEQRES 5 A 80 VAL TRP GLY SER VAL PRO MET PRO PRO GLN ASN VAL THR
SEQRES 6 A 80 ASP ALA GLU ALA LYS GLN LEU ALA GLN TRP ILE LEU SER
SEQRES 7 A 80 ILE LYS
HET HEC A 81 75
HETNAM HEC HEME C
FORMUL 2 HEC C34 H34 FE N4 O4
HELIX 1 1 GLU A 2 GLY A 9 1 8
HELIX 2 2 CYS A 10 CYS A 13 5 4
HELIX 3 3 ALA A 24 GLY A 34 1 11
HELIX 4 4 ASP A 37 LYS A 47 1 11
HELIX 5 5 THR A 65 ILE A 79 1 15
LINK SG CYS A 10 CAB HEC A 81 1555 1555 1.81
LINK SG CYS A 13 CAC HEC A 81 1555 1555 1.81
LINK NE2 HIS A 14 FE HEC A 81 1555 1555 2.20
LINK SD MET A 59 FE HEC A 81 1555 1555 2.13
SITE 1 AC1 21 LYS A 8 CYS A 10 ALA A 12 CYS A 13
SITE 2 AC1 21 HIS A 14 VAL A 21 TYR A 25 TYR A 41
SITE 3 AC1 21 LEU A 42 LYS A 45 ILE A 46 SER A 51
SITE 4 AC1 21 GLY A 52 VAL A 53 TRP A 54 GLY A 55
SITE 5 AC1 21 VAL A 57 MET A 59 PRO A 60 GLN A 62
SITE 6 AC1 21 LEU A 72
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes