Header list of 2afj.pdb file
Complete list - r 9 2 Bytes
HEADER GENE REGULATION 26-JUL-05 2AFJ
TITLE SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 2 (SSB-2)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GENE RICH CLUSTER, C9 GENE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: N-TERMINAL DOMAIN PLUS THE SPRY DOMAIN;
COMPND 5 SYNONYM: SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN SSB-2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: SSB-2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T
KEYWDS BETA SANDWICH, GENE REGULATION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.L.MASTERS,S.YAO,T.A.WILLSON,J.G.ZHANG,K.R.PALMER,B.J.SMITH,
AUTHOR 2 J.J.BABON,N.A.NICOLA,R.S.NORTON,S.E.NICHOLSON
REVDAT 4 09-MAR-22 2AFJ 1 REMARK SEQADV
REVDAT 3 24-FEB-09 2AFJ 1 VERSN
REVDAT 2 24-JAN-06 2AFJ 1 JRNL
REVDAT 1 03-JAN-06 2AFJ 0
JRNL AUTH S.L.MASTERS,S.YAO,T.A.WILLSON,J.G.ZHANG,K.R.PALMER,
JRNL AUTH 2 B.J.SMITH,J.J.BABON,N.A.NICOLA,R.S.NORTON,S.E.NICHOLSON
JRNL TITL THE SPRY DOMAIN OF SSB-2 ADOPTS A NOVEL FOLD THAT PRESENTS
JRNL TITL 2 CONSERVED PAR-4-BINDING RESIDUES
JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 77 2006
JRNL REFN ISSN 1545-9993
JRNL PMID 16369487
JRNL DOI 10.1038/NSMB1034
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, X-PLOR 2.9.3
REMARK 3 AUTHORS : BRUKER, BIOSPIN (XWINNMR), SCHWIETERS (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF
REMARK 3 2074, 1738 ARE NON-REDUNDANT NOE-DERIVED DISTANCE CONSTRAINTS,
REMARK 3 260 DIHEDRAL ANGLE RESTRAINTS, 76 DISTANTCE RESTRAINTS FROM
REMARK 3 HYDROGEN BONDS.
REMARK 4
REMARK 4 2AFJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-05.
REMARK 100 THE DEPOSITION ID IS D_1000033832.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 295
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.4MM U-15N; 0.6MM U-15N, 13C;
REMARK 210 1.0MM U-15N, 13C, 50% RANDOM 2H;
REMARK 210 0.4MM U-15N
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY; HNHA; 2D NOESY;
REMARK 210 1H-15N HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE; DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR 3.5, XEASY 1.3, CYANA
REMARK 210 1.0.6, X-PLOR 2.9.3
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS,
REMARK 210 SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 194
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE
REMARK 210 COVALENT GEOMETRY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY. CONSTRANTS FOR BACKBONE PHI AND PSI WERE ALSO
REMARK 210 OBTAINED FROM PROGRAM TALOS USING BACKBONE CHEMICAL SHIFTS.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HD3 ARG A 82 H GLY A 83 1.27
REMARK 500 O LEU A 29 H LEU A 32 1.42
REMARK 500 OD1 ASP A 52 HE ARG A 82 1.49
REMARK 500 O GLU A 30 H SER A 34 1.54
REMARK 500 O ALA A 109 H TYR A 200 1.58
REMARK 500 H GLU A 92 O ARG A 215 1.59
REMARK 500 O SER A 94 H ARG A 213 1.59
REMARK 500 O VAL A 105 H SER A 204 1.59
REMARK 500 O PRO A 38 N LEU A 40 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 7 44.66 -145.16
REMARK 500 1 ARG A 10 -71.93 -89.67
REMARK 500 1 SER A 12 -153.39 -127.79
REMARK 500 1 THR A 15 68.43 -115.48
REMARK 500 1 ALA A 18 101.45 -58.28
REMARK 500 1 LEU A 19 -155.08 179.85
REMARK 500 1 TYR A 20 -102.38 -91.79
REMARK 500 1 ASP A 22 66.91 -167.72
REMARK 500 1 PHE A 23 -104.45 -76.70
REMARK 500 1 GLU A 27 45.11 179.68
REMARK 500 1 ALA A 35 -169.99 -72.58
REMARK 500 1 ASP A 39 61.39 3.30
REMARK 500 1 LEU A 40 -45.47 -149.66
REMARK 500 1 TRP A 48 70.56 -103.52
REMARK 500 1 LYS A 51 -95.73 179.81
REMARK 500 1 ASP A 52 33.97 -68.97
REMARK 500 1 SER A 54 101.73 -50.60
REMARK 500 1 GLU A 61 -121.80 -66.21
REMARK 500 1 LEU A 64 88.76 0.61
REMARK 500 1 PRO A 70 -113.50 -72.16
REMARK 500 1 GLN A 73 -34.33 -36.11
REMARK 500 1 SER A 74 -36.52 -149.54
REMARK 500 1 LYS A 81 -97.55 -126.18
REMARK 500 1 ARG A 82 -87.41 -43.33
REMARK 500 1 GLN A 99 -83.71 -42.61
REMARK 500 1 ARG A 100 -59.75 -167.67
REMARK 500 1 THR A 102 -150.55 -156.21
REMARK 500 1 HIS A 103 113.05 -179.68
REMARK 500 1 ALA A 113 109.99 -36.02
REMARK 500 1 PRO A 114 -156.37 -72.81
REMARK 500 1 LEU A 115 59.21 -171.87
REMARK 500 1 GLN A 116 -70.99 -102.07
REMARK 500 1 ALA A 117 56.61 -114.59
REMARK 500 1 ASP A 118 146.65 -32.06
REMARK 500 1 ALA A 121 -67.88 173.48
REMARK 500 1 ALA A 122 88.44 178.65
REMARK 500 1 LEU A 123 -66.52 -98.88
REMARK 500 1 LEU A 124 -153.73 177.27
REMARK 500 1 SER A 126 -101.04 -123.91
REMARK 500 1 SER A 128 -166.42 -160.49
REMARK 500 1 LYS A 139 -164.87 -54.21
REMARK 500 1 HIS A 142 85.81 -150.18
REMARK 500 1 GLN A 143 -69.85 -142.07
REMARK 500 1 ALA A 149 109.83 -56.31
REMARK 500 1 LEU A 161 22.52 -161.24
REMARK 500 1 VAL A 162 88.81 -161.46
REMARK 500 1 GLU A 165 -81.49 -172.29
REMARK 500 1 THR A 185 -74.55 -84.89
REMARK 500 1 LEU A 187 28.19 -177.84
REMARK 500 1 VAL A 206 -159.68 -91.62
REMARK 500
REMARK 500 THIS ENTRY HAS 1116 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6311 RELATED DB: BMRB
REMARK 900 1H, 13C, 15N CHEMICAL SHIFT ASSIGNMENTS
DBREF 2AFJ A 12 224 UNP O88838 O88838_MOUSE 12 224
SEQADV 2AFJ GLY A 6 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ SER A 7 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ SER A 8 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ ALA A 9 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ ARG A 10 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ GLN A 11 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ THR A 225 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ ARG A 226 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ ARG A 227 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ ILE A 228 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ HIS A 229 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ ARG A 230 UNP O88838 CLONING ARTIFACT
SEQADV 2AFJ ASP A 231 UNP O88838 CLONING ARTIFACT
SEQRES 1 A 226 GLY SER SER ALA ARG GLN SER THR PRO THR SER GLN ALA
SEQRES 2 A 226 LEU TYR SER ASP PHE SER PRO PRO GLU GLY LEU GLU GLU
SEQRES 3 A 226 LEU LEU SER ALA PRO PRO PRO ASP LEU VAL ALA GLN ARG
SEQRES 4 A 226 HIS HIS GLY TRP ASN PRO LYS ASP CYS SER GLU ASN ILE
SEQRES 5 A 226 ASP VAL LYS GLU GLY GLY LEU CYS PHE GLU ARG ARG PRO
SEQRES 6 A 226 VAL ALA GLN SER THR ASP GLY VAL ARG GLY LYS ARG GLY
SEQRES 7 A 226 TYR SER ARG GLY LEU HIS ALA TRP GLU ILE SER TRP PRO
SEQRES 8 A 226 LEU GLU GLN ARG GLY THR HIS ALA VAL VAL GLY VAL ALA
SEQRES 9 A 226 THR ALA LEU ALA PRO LEU GLN ALA ASP HIS TYR ALA ALA
SEQRES 10 A 226 LEU LEU GLY SER ASN SER GLU SER TRP GLY TRP ASP ILE
SEQRES 11 A 226 GLY ARG GLY LYS LEU TYR HIS GLN SER LYS GLY LEU GLU
SEQRES 12 A 226 ALA PRO GLN TYR PRO ALA GLY PRO GLN GLY GLU GLN LEU
SEQRES 13 A 226 VAL VAL PRO GLU ARG LEU LEU VAL VAL LEU ASP MET GLU
SEQRES 14 A 226 GLU GLY THR LEU GLY TYR SER ILE GLY GLY THR TYR LEU
SEQRES 15 A 226 GLY PRO ALA PHE ARG GLY LEU LYS GLY ARG THR LEU TYR
SEQRES 16 A 226 PRO SER VAL SER ALA VAL TRP GLY GLN CYS GLN VAL ARG
SEQRES 17 A 226 ILE ARG TYR MET GLY GLU ARG ARG VAL GLU GLU THR ARG
SEQRES 18 A 226 ARG ILE HIS ARG ASP
HELIX 1 1 LEU A 29 SER A 34 1 6
HELIX 2 2 VAL A 41 GLY A 47 1 7
HELIX 3 3 GLY A 136 GLY A 138 5 3
HELIX 4 4 PRO A 156 LEU A 161 5 6
HELIX 5 5 ALA A 190 THR A 198 1 9
SHEET 1 A 2 ASP A 58 LYS A 60 0
SHEET 2 A 2 CYS A 65 GLU A 67 -1 O GLU A 67 N ASP A 58
SHEET 1 B 4 VAL A 78 GLY A 80 0
SHEET 2 B 4 TYR A 200 ALA A 205 -1 O ALA A 205 N VAL A 78
SHEET 3 B 4 VAL A 105 THR A 110 -1 N ALA A 109 O TYR A 200
SHEET 4 B 4 GLU A 129 ASP A 134 -1 O GLU A 129 N THR A 110
SHEET 1 C 4 THR A 177 SER A 181 0
SHEET 2 C 4 LEU A 167 ASP A 172 -1 N VAL A 170 O GLY A 179
SHEET 3 C 4 LEU A 88 SER A 94 -1 N ILE A 93 O LEU A 167
SHEET 4 C 4 ARG A 213 MET A 217 -1 O ARG A 213 N SER A 94
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes