Header list of 2aff.pdb file
Complete list - ar 9 Bytes
HEADER CELL CYCLE 25-JUL-05 2AFF
TITLE THE SOLUTION STRUCTURE OF THE KI67FHA/HNIFK(226-269)3P COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ANTIGEN KI-67;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: FHA DOMAIN;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: MKI67 FHA DOMAIN INTERACTING NUCLEOLAR PHOSPHOPROTEIN;
COMPND 8 CHAIN: B;
COMPND 9 FRAGMENT: RESIDUES 226-269;
COMPND 10 SYNONYM: NUCLEOLAR PROTEIN INTERACTING WITH THE FHA DOMAIN OF PKI-67;
COMPND 11 HNIFK; NUCLEOLAR PHOSPHOPROTEIN NOPP34;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MKI67;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEG;
SOURCE 11 MOL_ID: 2;
SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 13 ORGANISM_COMMON: HUMAN;
SOURCE 14 ORGANISM_TAXID: 9606;
SOURCE 15 GENE: MKI67IP;
SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PEG
KEYWDS KI67; FHA; NIFK; NMR; PHOSPHOPROTEIN, CELL CYCLE
EXPDTA SOLUTION NMR
NUMMDL 100
AUTHOR I.-J.L.BYEON,H.LI,H.SONG,A.M.GRONENBORN,M.D.TSAI
REVDAT 5 09-MAR-22 2AFF 1 REMARK LINK
REVDAT 4 26-MAY-10 2AFF 1 SEQADV SOURCE
REVDAT 3 24-FEB-09 2AFF 1 VERSN
REVDAT 2 28-MAR-06 2AFF 1 JRNL
REVDAT 1 25-OCT-05 2AFF 0
JRNL AUTH I.J.BYEON,H.LI,H.SONG,A.M.GRONENBORN,M.D.TSAI
JRNL TITL SEQUENTIAL PHOSPHORYLATION AND MULTISITE INTERACTIONS
JRNL TITL 2 CHARACTERIZE SPECIFIC TARGET RECOGNITION BY THE FHA DOMAIN
JRNL TITL 3 OF KI67.
JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 987 2005
JRNL REFN ISSN 1545-9993
JRNL PMID 16244663
JRNL DOI 10.1038/NSMB1008
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH H.LI,I.-J.L.BYEON,Y.JU,M.-D.TSAI
REMARK 1 TITL STRUCTURE OF HUMAN KI67 FHA DOMAIN AND ITS BINDING TO A
REMARK 1 TITL 2 PHOSPHOPROTEIN FRAGMENT FROM HNIFK REVEAL UNIQUE RECOGNITION
REMARK 1 TITL 3 SITES AND NEW VIEWS TO THE STRUCTURAL BASIS OF FHA DOMAIN
REMARK 1 TITL 4 FUNCTIONS.
REMARK 1 REF J.MOL.BIOL. V. 335 371 2004
REMARK 1 REFN ISSN 0022-2836
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR NIH VERSION, X-PLOR NIH VERSION
REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF
REMARK 3 3476 CONSTRAINTS, 3141 ARE DISTANCE, 215 DIHEDRAL ANGLE, AND 120
REMARK 3 N-H RESIDUAL DIPOLAR COUPLING CONSTRAINTS
REMARK 4
REMARK 4 2AFF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-05.
REMARK 100 THE DEPOSITION ID IS D_1000033829.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293
REMARK 210 PH : 7.4
REMARK 210 IONIC STRENGTH : 150 MM NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.9 MM KI67 FHA U-15N,13C; 1 MM
REMARK 210 HNIFK(226-269)3P UNLABELED 5 MM
REMARK 210 HEPES, 5 MM DTT, 1 MM EDTA, 150
REMARK 210 MM NACL, PH 7.4; 0.9 MM KI67 FHA
REMARK 210 U-15N,13C; 1 MM HNIFK(226-269)3P
REMARK 210 UNLABELED 5 MM HEPES, 5 MM DTT,
REMARK 210 1 MM EDTA, 150 MM NACL, PH 7.4;
REMARK 210 1 MM KI67 FHA UNLABLED; 0.9 MM
REMARK 210 HNIFK(226-269)3P U-15N,13C 5 MM
REMARK 210 HEPES, 5 MM DTT, 1 MM EDTA, 150
REMARK 210 MM NACL, PH 7.4; 1 MM KI67 FHA
REMARK 210 UNLABLED; 0.9 MM HNIFK(226-269)
REMARK 210 3P U-15N,13C 5 MM HEPES, 5 MM
REMARK 210 DTT, 1 MM EDTA, 150 MM NACL, PH
REMARK 210 7.4
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; 3D_12C/14N-FILTERED_13C_SEPARATED NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 750 MHZ; 600 MHZ; 500
REMARK 210 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE; DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 512
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 100
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-100
REMARK 465 RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 TRP A 2
REMARK 465 SER A 101
REMARK 465 LEU A 102
REMARK 465 GLN A 103
REMARK 465 ASN A 104
REMARK 465 GLY A 105
REMARK 465 ARG A 106
REMARK 465 LYS A 107
REMARK 465 SER A 108
REMARK 465 THR A 109
REMARK 465 GLU A 110
REMARK 465 PHE A 111
REMARK 465 PRO A 112
REMARK 465 ARG A 113
REMARK 465 LYS A 114
REMARK 465 ILE A 115
REMARK 465 ARG A 116
REMARK 465 GLU A 117
REMARK 465 GLN A 118
REMARK 465 GLU A 119
REMARK 465 PRO A 120
REMARK 465 LYS B 226
REMARK 465 THR B 227
REMARK 465 SER B 268
REMARK 465 CYS B 269
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O ILE A 90 H ARG A 93 1.43
REMARK 500 HE ARG A 31 O VAL A 44 1.46
REMARK 500 H ILE A 90 O ARG A 93 1.46
REMARK 500 O GLN A 70 H THR A 89 1.51
REMARK 500 H VAL A 71 O SER A 74 1.52
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLN A 40 38.40 -81.74
REMARK 500 1 HIS A 48 -74.13 34.26
REMARK 500 1 ILE A 76 68.46 -113.89
REMARK 500 1 ILE A 91 -101.56 33.24
REMARK 500 1 SEP B 230 4.93 -66.50
REMARK 500 1 ASP B 254 -14.58 -45.44
REMARK 500 1 LYS B 257 -41.38 -20.19
REMARK 500 1 ASP B 258 62.19 -100.12
REMARK 500 1 ASP B 259 -113.67 -50.61
REMARK 500 1 GLU B 260 22.54 -151.72
REMARK 500 2 GLN A 40 28.22 -78.78
REMARK 500 2 PRO A 42 -8.74 -53.84
REMARK 500 2 HIS A 48 -73.31 35.88
REMARK 500 2 ILE A 91 -105.58 35.34
REMARK 500 2 SEP B 230 -7.58 -56.27
REMARK 500 2 LYS B 257 11.53 -67.82
REMARK 500 2 ASP B 259 54.25 4.92
REMARK 500 2 GLU B 260 4.37 55.46
REMARK 500 3 LEU A 22 47.86 -79.06
REMARK 500 3 GLN A 40 25.48 -77.25
REMARK 500 3 HIS A 48 -76.13 37.75
REMARK 500 3 GLU A 55 -26.08 -39.73
REMARK 500 3 GLU A 57 -158.27 -161.84
REMARK 500 3 ILE A 91 -109.30 38.28
REMARK 500 3 SEP B 230 -18.70 89.57
REMARK 500 3 TPO B 234 79.57 -115.30
REMARK 500 3 LYS B 257 -137.68 -125.29
REMARK 500 3 ASP B 258 74.37 -9.58
REMARK 500 3 GLU B 260 2.75 46.48
REMARK 500 4 GLN A 40 28.31 -73.22
REMARK 500 4 HIS A 48 -74.25 31.08
REMARK 500 4 ILE A 91 -94.12 38.61
REMARK 500 4 ASP B 229 158.04 95.55
REMARK 500 4 GLN B 231 23.88 170.41
REMARK 500 4 ASN B 253 27.40 91.39
REMARK 500 4 ASP B 255 58.05 106.28
REMARK 500 4 LYS B 257 -89.24 20.52
REMARK 500 4 ASP B 258 87.76 -27.11
REMARK 500 4 ASP B 259 -93.09 -87.06
REMARK 500 5 GLN A 40 34.24 -73.73
REMARK 500 5 HIS A 48 -78.05 39.22
REMARK 500 5 GLU A 55 -28.85 -39.75
REMARK 500 5 ILE A 91 -98.69 35.99
REMARK 500 5 ASP B 229 -78.70 15.10
REMARK 500 5 SEP B 230 9.28 -152.91
REMARK 500 5 TPO B 234 78.27 -112.55
REMARK 500 5 ASN B 253 12.79 -177.47
REMARK 500 5 ASP B 255 66.30 156.27
REMARK 500 5 LYS B 257 8.29 -66.20
REMARK 500 6 GLN A 40 25.64 -75.88
REMARK 500
REMARK 500 THIS ENTRY HAS 925 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1R21 RELATED DB: PDB
REMARK 900 THE SOLUTION STRUCTURE OF KI67FHA IN A FREE FORM
DBREF 2AFF A 1 120 UNP P46013 KI67_HUMAN 1 120
DBREF 2AFF B 226 269 UNP Q9BYG3 MK67I_HUMAN 226 269
SEQRES 1 A 120 MET TRP PRO THR ARG ARG LEU VAL THR ILE LYS ARG SER
SEQRES 2 A 120 GLY VAL ASP GLY PRO HIS PHE PRO LEU SER LEU SER THR
SEQRES 3 A 120 CYS LEU PHE GLY ARG GLY ILE GLU CYS ASP ILE ARG ILE
SEQRES 4 A 120 GLN LEU PRO VAL VAL SER LYS GLN HIS CYS LYS ILE GLU
SEQRES 5 A 120 ILE HIS GLU GLN GLU ALA ILE LEU HIS ASN PHE SER SER
SEQRES 6 A 120 THR ASN PRO THR GLN VAL ASN GLY SER VAL ILE ASP GLU
SEQRES 7 A 120 PRO VAL ARG LEU LYS HIS GLY ASP VAL ILE THR ILE ILE
SEQRES 8 A 120 ASP ARG SER PHE ARG TYR GLU ASN GLU SER LEU GLN ASN
SEQRES 9 A 120 GLY ARG LYS SER THR GLU PHE PRO ARG LYS ILE ARG GLU
SEQRES 10 A 120 GLN GLU PRO
SEQRES 1 B 44 LYS THR VAL ASP SEP GLN GLY PRO TPO PRO VAL CYS TPO
SEQRES 2 B 44 PRO THR PHE LEU GLU ARG ARG LYS SER GLN VAL ALA GLU
SEQRES 3 B 44 LEU ASN ASP ASP ASP LYS ASP ASP GLU ILE VAL PHE LYS
SEQRES 4 B 44 GLN PRO ILE SER CYS
MODRES 2AFF SEP B 230 SER PHOSPHOSERINE
MODRES 2AFF TPO B 234 THR PHOSPHOTHREONINE
MODRES 2AFF TPO B 238 THR PHOSPHOTHREONINE
HET SEP B 230 14
HET TPO B 234 17
HET TPO B 238 17
HETNAM SEP PHOSPHOSERINE
HETNAM TPO PHOSPHOTHREONINE
HETSYN SEP PHOSPHONOSERINE
HETSYN TPO PHOSPHONOTHREONINE
FORMUL 2 SEP C3 H8 N O6 P
FORMUL 2 TPO 2(C4 H10 N O6 P)
HELIX 1 1 TPO B 238 LEU B 252 1 15
HELIX 2 2 ASN B 253 ASP B 258 5 6
SHEET 1 A 6 ASP A 16 PRO A 21 0
SHEET 2 A 6 ARG A 5 ILE A 10 -1 N LEU A 7 O PHE A 20
SHEET 3 A 6 ARG A 93 ASN A 99 -1 O GLU A 98 N ARG A 6
SHEET 4 A 6 VAL A 87 ILE A 90 -1 N ILE A 90 O ARG A 93
SHEET 5 A 6 GLN A 70 VAL A 71 -1 N GLN A 70 O THR A 89
SHEET 6 A 6 SER A 74 VAL A 75 -1 O SER A 74 N VAL A 71
SHEET 1 B 6 VAL A 80 LEU A 82 0
SHEET 2 B 6 ALA A 58 ASN A 62 -1 N ALA A 58 O LEU A 82
SHEET 3 B 6 CYS A 49 ILE A 53 -1 N LYS A 50 O HIS A 61
SHEET 4 B 6 THR A 26 GLY A 30 -1 N PHE A 29 O CYS A 49
SHEET 5 B 6 ILE A 37 ILE A 39 1 O ILE A 37 N LEU A 28
SHEET 6 B 6 ILE B 261 PHE B 263 -1 O VAL B 262 N ARG A 38
LINK C ASP B 229 N SEP B 230 1555 1555 1.33
LINK C SEP B 230 N GLN B 231 1555 1555 1.33
LINK C PRO B 233 N TPO B 234 1555 1555 1.33
LINK C TPO B 234 N PRO B 235 1555 1555 1.31
LINK C CYS B 237 N TPO B 238 1555 1555 1.34
LINK C TPO B 238 N PRO B 239 1555 1555 1.32
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - ar 9 Bytes