Header list of 2adr.pdb file
Complete list - v 3 2 Bytes
HEADER TRANSCRIPTION REGULATION 20-MAR-98 2ADR
TITLE ADR1 DNA-BINDING DOMAIN FROM SACCHAROMYCES CEREVISIAE, NMR, 25
TITLE 2 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ADR1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: DNA-BINDING DOMAIN;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 CELL_LINE: BL21;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A
KEYWDS TRANSCRIPTION REGULATION, ADR1, ZINC FINGER
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR P.M.BOWERS,R.E.KLEIVT
REVDAT 3 03-NOV-21 2ADR 1 REMARK SEQADV LINK
REVDAT 2 24-FEB-09 2ADR 1 VERSN
REVDAT 1 17-JUN-98 2ADR 0
JRNL AUTH P.M.BOWERS,L.E.SCHAUFLER,R.E.KLEVIT
JRNL TITL A FOLDING TRANSITION AND NOVEL ZINC FINGER ACCESSORY DOMAIN
JRNL TITL 2 IN THE TRANSCRIPTION FACTOR ADR1.
JRNL REF NAT.STRUCT.BIOL. V. 6 478 1999
JRNL REFN ISSN 1072-8368
JRNL PMID 10331877
JRNL DOI 10.1038/8283
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH D.E.HYRE,R.E.KLEVIT
REMARK 1 TITL A DISORDER-TO-ORDER TRANSITION COULED TO DNA BINDING IN THE
REMARK 1 TITL 2 ESSENTIAL ZINC-FINGER DNA-BINDING OF YEAST ADR1 ELUCIDATED
REMARK 1 TITL 3 BY BACKBONE DYNAMICS AND PROTON EXCHANGE
REMARK 1 REF TO BE PUBLISHED
REMARK 1 REFN
REMARK 1 REFERENCE 2
REMARK 1 AUTH M.SCHMIEDESKAMP,P.RAJAGOPAL,R.E.KLEVIT
REMARK 1 TITL NMR CHEMICAL SHIFT PERTURBATION MAPPING OF DNA BINDING BY A
REMARK 1 TITL 2 ZINC-FINGER DOMAIN FROM THE YEAST TRANSCRIPTION FACTOR ADR1
REMARK 1 REF PROTEIN SCI. V. 6 1835 1997
REMARK 1 REFN ISSN 0961-8368
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS HAVE BEEN SUBMITTED
REMARK 3 FOR PUBLICATION.
REMARK 4
REMARK 4 2ADR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000177746.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 5.5
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 13C EDITED NOESY; 15N EDITED
REMARK 210 NOESY; HNHB
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ
REMARK 210 SPECTROMETER MODEL : DMX750
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPES, X-PLOR
REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED
REMARK 210 ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 50
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25
REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY TERM
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ALA A 114 23.10 -143.64
REMARK 500 1 SER A 125 33.80 -97.41
REMARK 500 1 THR A 127 -43.82 -139.41
REMARK 500 1 ASN A 138 53.08 72.65
REMARK 500 1 ILE A 154 -53.13 -123.82
REMARK 500 1 HIS A 155 -79.57 -76.29
REMARK 500 1 SER A 156 -167.08 178.13
REMARK 500 1 LEU A 159 83.89 60.00
REMARK 500 2 SER A 103 114.16 -160.28
REMARK 500 2 ALA A 114 25.98 -161.03
REMARK 500 2 TYR A 123 33.57 -96.40
REMARK 500 2 ASN A 128 120.57 63.93
REMARK 500 2 LYS A 130 148.47 62.63
REMARK 500 2 LEU A 136 -46.13 -135.26
REMARK 500 2 ASN A 138 85.87 72.35
REMARK 500 2 ILE A 154 -53.85 -121.10
REMARK 500 2 HIS A 155 -78.32 -76.59
REMARK 500 2 SER A 156 -174.31 -177.53
REMARK 500 2 LEU A 159 160.03 61.46
REMARK 500 3 ARG A 111 -159.14 -89.55
REMARK 500 3 HIS A 126 -72.32 -68.90
REMARK 500 3 THR A 127 -149.39 -98.00
REMARK 500 3 LEU A 136 -46.46 -135.25
REMARK 500 3 ASN A 138 74.70 72.69
REMARK 500 3 ILE A 154 -54.36 -120.34
REMARK 500 3 HIS A 155 -78.38 -78.37
REMARK 500 3 SER A 156 -176.28 -177.80
REMARK 500 3 ASN A 158 -72.53 -82.59
REMARK 500 3 LEU A 159 -64.12 -171.61
REMARK 500 4 VAL A 108 -46.59 -131.67
REMARK 500 4 HIS A 126 -71.32 -67.16
REMARK 500 4 ASN A 128 94.39 42.13
REMARK 500 4 GLU A 129 161.33 60.95
REMARK 500 4 LEU A 136 -46.79 -135.56
REMARK 500 4 ASN A 138 79.97 71.48
REMARK 500 4 SER A 156 119.11 64.37
REMARK 500 4 ASN A 158 -45.26 -133.29
REMARK 500 4 LEU A 159 -67.49 -140.58
REMARK 500 5 VAL A 108 -50.60 -121.83
REMARK 500 5 ARG A 111 -158.04 -83.02
REMARK 500 5 ALA A 114 23.85 -155.48
REMARK 500 5 THR A 127 79.36 -101.31
REMARK 500 5 GLU A 129 -78.47 -137.52
REMARK 500 5 ASN A 138 49.09 74.03
REMARK 500 5 HIS A 155 -75.19 -63.31
REMARK 500 5 SER A 156 143.55 -174.64
REMARK 500 6 ALA A 112 81.34 -150.21
REMARK 500 6 LEU A 136 -45.90 -135.25
REMARK 500 6 ARG A 139 -173.25 -68.18
REMARK 500 6 SER A 156 155.12 61.49
REMARK 500
REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 102 0.22 SIDE CHAIN
REMARK 500 1 ARG A 111 0.22 SIDE CHAIN
REMARK 500 1 ARG A 115 0.29 SIDE CHAIN
REMARK 500 1 ARG A 121 0.30 SIDE CHAIN
REMARK 500 1 ARG A 124 0.31 SIDE CHAIN
REMARK 500 1 ARG A 139 0.23 SIDE CHAIN
REMARK 500 1 ARG A 143 0.24 SIDE CHAIN
REMARK 500 1 ARG A 144 0.28 SIDE CHAIN
REMARK 500 1 ARG A 149 0.31 SIDE CHAIN
REMARK 500 2 ARG A 102 0.28 SIDE CHAIN
REMARK 500 2 ARG A 111 0.26 SIDE CHAIN
REMARK 500 2 ARG A 115 0.32 SIDE CHAIN
REMARK 500 2 ARG A 121 0.25 SIDE CHAIN
REMARK 500 2 ARG A 124 0.27 SIDE CHAIN
REMARK 500 2 ARG A 139 0.30 SIDE CHAIN
REMARK 500 2 ARG A 143 0.26 SIDE CHAIN
REMARK 500 2 ARG A 144 0.30 SIDE CHAIN
REMARK 500 2 ARG A 149 0.32 SIDE CHAIN
REMARK 500 3 ARG A 102 0.25 SIDE CHAIN
REMARK 500 3 ARG A 111 0.23 SIDE CHAIN
REMARK 500 3 ARG A 115 0.24 SIDE CHAIN
REMARK 500 3 ARG A 121 0.23 SIDE CHAIN
REMARK 500 3 ARG A 124 0.29 SIDE CHAIN
REMARK 500 3 ARG A 139 0.31 SIDE CHAIN
REMARK 500 3 ARG A 143 0.29 SIDE CHAIN
REMARK 500 3 ARG A 144 0.27 SIDE CHAIN
REMARK 500 3 ARG A 149 0.28 SIDE CHAIN
REMARK 500 4 ARG A 102 0.26 SIDE CHAIN
REMARK 500 4 ARG A 111 0.27 SIDE CHAIN
REMARK 500 4 ARG A 115 0.24 SIDE CHAIN
REMARK 500 4 ARG A 121 0.25 SIDE CHAIN
REMARK 500 4 ARG A 124 0.28 SIDE CHAIN
REMARK 500 4 ARG A 139 0.26 SIDE CHAIN
REMARK 500 4 ARG A 143 0.22 SIDE CHAIN
REMARK 500 4 ARG A 144 0.25 SIDE CHAIN
REMARK 500 4 ARG A 149 0.26 SIDE CHAIN
REMARK 500 5 ARG A 102 0.31 SIDE CHAIN
REMARK 500 5 ARG A 111 0.27 SIDE CHAIN
REMARK 500 5 ARG A 115 0.31 SIDE CHAIN
REMARK 500 5 ARG A 121 0.32 SIDE CHAIN
REMARK 500 5 ARG A 124 0.31 SIDE CHAIN
REMARK 500 5 ARG A 139 0.31 SIDE CHAIN
REMARK 500 5 ARG A 143 0.31 SIDE CHAIN
REMARK 500 5 ARG A 144 0.31 SIDE CHAIN
REMARK 500 5 ARG A 149 0.31 SIDE CHAIN
REMARK 500 6 ARG A 102 0.27 SIDE CHAIN
REMARK 500 6 ARG A 111 0.22 SIDE CHAIN
REMARK 500 6 ARG A 115 0.28 SIDE CHAIN
REMARK 500 6 ARG A 121 0.30 SIDE CHAIN
REMARK 500 6 ARG A 124 0.30 SIDE CHAIN
REMARK 500
REMARK 500 THIS ENTRY HAS 225 PLANE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 163 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 106 SG
REMARK 620 2 CYS A 109 SG 114.4
REMARK 620 3 HIS A 122 NE2 116.7 126.2
REMARK 620 4 HIS A 126 NE2 103.1 102.1 82.0
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 162 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 134 SG
REMARK 620 2 CYS A 137 SG 102.4
REMARK 620 3 HIS A 150 NE2 110.4 88.3
REMARK 620 4 HIS A 155 NE2 121.8 124.8 103.6
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: ZNC
REMARK 800 EVIDENCE_CODE: UNKNOWN
REMARK 800 SITE_DESCRIPTION: ZINC FINGER 2.
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 162
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 163
DBREF 2ADR A 102 161 UNP P07248 ADR1_YEAST 102 161
SEQADV 2ADR ALA A 140 UNP P07248 CYS 140 ENGINEERED MUTATION
SEQRES 1 A 60 ARG SER PHE VAL CYS GLU VAL CYS THR ARG ALA PHE ALA
SEQRES 2 A 60 ARG GLN GLU HIS LEU LYS ARG HIS TYR ARG SER HIS THR
SEQRES 3 A 60 ASN GLU LYS PRO TYR PRO CYS GLY LEU CYS ASN ARG ALA
SEQRES 4 A 60 PHE THR ARG ARG ASP LEU LEU ILE ARG HIS ALA GLN LYS
SEQRES 5 A 60 ILE HIS SER GLY ASN LEU GLY GLU
HET ZN A 162 1
HET ZN A 163 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 GLN A 116 HIS A 126 1 11
HELIX 2 2 ARG A 144 ALA A 151 1 8
SHEET 1 A 2 TYR A 132 PRO A 133 0
SHEET 2 A 2 ALA A 140 PHE A 141 -1 N PHE A 141 O TYR A 132
LINK SG CYS A 106 ZN ZN A 163 1555 1555 2.37
LINK SG CYS A 109 ZN ZN A 163 1555 1555 2.35
LINK NE2 HIS A 122 ZN ZN A 163 1555 1555 2.05
LINK NE2 HIS A 126 ZN ZN A 163 1555 1555 2.06
LINK SG CYS A 134 ZN ZN A 162 1555 1555 2.35
LINK SG CYS A 137 ZN ZN A 162 1555 1555 2.28
LINK NE2 HIS A 150 ZN ZN A 162 1555 1555 2.05
LINK NE2 HIS A 155 ZN ZN A 162 1555 1555 2.03
SITE 1 ZNC 8 CYS A 106 CYS A 109 HIS A 122 HIS A 126
SITE 2 ZNC 8 CYS A 134 CYS A 137 HIS A 150 HIS A 155
SITE 1 AC1 4 CYS A 134 CYS A 137 HIS A 150 HIS A 155
SITE 1 AC2 5 CYS A 106 CYS A 109 ARG A 111 HIS A 122
SITE 2 AC2 5 HIS A 126
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - v 3 2 Bytes