Header list of 2a0t.pdb file
Complete list - r 9 2 Bytes
HEADER TRANSFERASE 16-JUN-05 2A0T
TITLE NMR STRUCTURE OF THE FHA1 DOMAIN OF RAD53 IN COMPLEX WITH A BIOLOGICAL
TITLE 2 RELEVANT PHOSPHOPEPTIDE DERIVED FROM MADT1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE RAD53;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: N-TERMINAL FHA DOMAIN (FHA1);
COMPND 5 SYNONYM: SERINE-PROTEIN KINASE 1;
COMPND 6 EC: 2.7.1.37;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: HYPOTHETICAL 73.8 KDA PROTEIN IN SAS3-SEC17 INTERGENIC
COMPND 10 REGION, RESIDUES 301-310;
COMPND 11 CHAIN: B;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 GENE: SPK1 OR RAD53;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T;
SOURCE 11 MOL_ID: 2;
SOURCE 12 SYNTHETIC: YES;
SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN SACCHAROMYCES
SOURCE 14 CEREVISIAE (YEAST)
KEYWDS FHA DOMAIN. RAD53, MDT1, PHOSPHOTHREONINE, PHOSPHOPROTEIN,
KEYWDS 2 TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.MAHAJAN,C.YUAN,B.L.PIKE,J.HEIERHORST,C.-F.CHANG,M.-D.TSAI
REVDAT 3 09-MAR-22 2A0T 1 REMARK SEQADV LINK
REVDAT 2 24-FEB-09 2A0T 1 VERSN
REVDAT 1 08-NOV-05 2A0T 0
JRNL AUTH A.MAHAJAN,C.YUAN,B.L.PIKE,J.HEIERHORST,C.-F.CHANG,M.-D.TSAI
JRNL TITL FHA DOMAIN-LIGAND INTERACTIONS: IMPORTANCE OF INTEGRATING
JRNL TITL 2 CHEMICAL AND BIOLOGICAL APPROACHES
JRNL REF J.AM.CHEM.SOC. V. 127 14572 2005
JRNL REFN ISSN 0002-7863
JRNL PMID 16231900
JRNL DOI 10.1021/JA054538M
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH C.YUAN,S.YONGKIETTRAKUL,I.-J.L.BYEON,S.ZHOU,M.-D.TSAI
REMARK 1 TITL SOLUTION STRUCTURES OF TWO FHA1-PHOSPHOTHREONINE PEPTIDE
REMARK 1 TITL 2 COMPLEXES PROVIDE INSIGHT INTO THE STRUCTURAL BASIS OF THE
REMARK 1 TITL 3 LIGAND SPECIFICITY OF FHA1 FROM YEAST RAD53
REMARK 1 REF J.MOL.BIOL. V. 314 563 2001
REMARK 1 REFN ISSN 0022-2836
REMARK 1 PMID 11846567
REMARK 1 DOI 10.1006/JMBI.2001.5140
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CNS 1.1
REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER ET AL. (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE COMPLEX STRUCTURES ARE GENERATED
REMARK 3 USING A TOTAL OF 2524 NMR CONSTRAINTS INCLUDING CONSTRAINTS IN
REMARK 3 THIS PDB FILE AND CONSTRAINTS OF FREE FHA1 IN PDB ACCESS CODE
REMARK 3 1K3J
REMARK 4
REMARK 4 2A0T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-05.
REMARK 100 THE DEPOSITION ID IS D_1000033349.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE, 1 MM
REMARK 210 DTT, AND 1 MM EDTA
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.5 MM FHA1 U-13C, 15N, ~0.8 MM
REMARK 210 PEPTIDE, 10 MM SODIUM PHOSPHATE
REMARK 210 BUFFER (PH 6.5), 1 MM DTT,1 MM
REMARK 210 EDTA, 90% H2O, 10% D2O; 0.5 MM
REMARK 210 FHA1 U-13C, 15N, ~0.8 MM PEPTIDE,
REMARK 210 10 MM SODIUM PHOSPHATE BUFFER
REMARK 210 (PH 6.5), 1 MM DTT, 1 MM EDTA,
REMARK 210 100% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 13C-EDITED 13C/15N-FILTERED
REMARK 210 NOESY; 3D 13C/15N-FILTERED, 13C-
REMARK 210 EDITED NOESY; 3D_13C-SEPARATED_
REMARK 210 NOESY; 2D 13C/15N-FILTERED NOESY;
REMARK 210 2D 13C/15N-FILTERED TOCSY; 2D
REMARK 210 13C/15N-FILTERED COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : DRX; DMX; AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5, CNS 1.1
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 50
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE
REMARK 210 COVALENT GEOMETRY, STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS, STRUCTURES WITH THE
REMARK 210 LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H TRP A 66 O ILE A 91 1.57
REMARK 500 H PHE A 68 O PHE A 89 1.58
REMARK 500 O VAL A 132 H LEU A 141 1.58
REMARK 500 O ARG A 35 H PHE A 146 1.59
REMARK 500 H GLN A 90 O ASN A 102 1.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 THR A 15 -70.83 -145.25
REMARK 500 1 ASN A 31 37.74 -179.73
REMARK 500 1 GLN A 42 -43.32 -146.92
REMARK 500 1 SER A 61 -175.55 60.32
REMARK 500 1 ASN A 80 92.30 -64.78
REMARK 500 1 GLU A 95 -166.95 58.41
REMARK 500 1 ASN A 98 174.76 61.86
REMARK 500 1 ILE A 104 24.50 -145.58
REMARK 500 1 ASN A 119 33.57 35.10
REMARK 500 1 ASP A 128 171.27 -53.81
REMARK 500 1 ASP A 161 31.12 -162.47
REMARK 500 1 PRO B 167 -168.47 -74.65
REMARK 500 1 ASP B 168 105.82 -169.73
REMARK 500 1 ILE B 172 156.91 49.88
REMARK 500 2 THR A 15 -44.21 -165.44
REMARK 500 2 ASN A 31 38.99 176.77
REMARK 500 2 VAL A 33 -61.68 -93.55
REMARK 500 2 GLN A 42 -40.05 -171.51
REMARK 500 2 ILE A 62 155.47 56.45
REMARK 500 2 LYS A 63 -64.19 -120.67
REMARK 500 2 ILE A 104 24.22 -144.69
REMARK 500 2 ASN A 119 34.60 34.93
REMARK 500 2 ASP A 128 170.70 -50.83
REMARK 500 2 ASP A 161 94.80 59.69
REMARK 500 2 PRO B 167 -175.56 -67.25
REMARK 500 2 ASP B 168 138.76 -172.44
REMARK 500 3 ASN A 31 39.41 176.00
REMARK 500 3 VAL A 33 -60.84 -92.62
REMARK 500 3 GLN A 42 -45.44 -144.09
REMARK 500 3 LYS A 63 -62.96 -124.72
REMARK 500 3 ILE A 104 24.03 -143.62
REMARK 500 3 ASN A 119 33.89 35.94
REMARK 500 3 ASP A 128 172.00 -54.50
REMARK 500 3 ASP B 168 58.20 -92.35
REMARK 500 3 GLU B 171 79.28 -156.51
REMARK 500 3 ILE B 172 156.56 50.15
REMARK 500 4 ASN A 31 38.19 179.09
REMARK 500 4 VAL A 33 -60.31 -91.92
REMARK 500 4 GLN A 42 -43.96 -146.08
REMARK 500 4 SER A 61 30.42 -98.16
REMARK 500 4 ILE A 62 140.12 -171.25
REMARK 500 4 LYS A 63 -53.22 -132.61
REMARK 500 4 LEU A 78 -70.19 -73.19
REMARK 500 4 ASN A 80 55.32 179.81
REMARK 500 4 ASP A 96 -167.50 59.80
REMARK 500 4 ILE A 104 35.86 -149.67
REMARK 500 4 ASN A 119 33.42 35.65
REMARK 500 4 ASP A 128 -177.96 -59.87
REMARK 500 4 ASN A 158 -173.41 44.81
REMARK 500 4 ARG A 162 96.74 60.48
REMARK 500
REMARK 500 THIS ENTRY HAS 291 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 2A0T A 14 164 UNP P22216 RAD53_YEAST 14 164
DBREF 2A0T B 165 174 UNP P34217 YBF1_YEAST 301 310
SEQADV 2A0T TPO B 169 UNP P34217 THR 305 MODIFIED RESIDUE
SEQRES 1 A 151 ALA THR GLN ARG PHE LEU ILE GLU LYS PHE SER GLN GLU
SEQRES 2 A 151 GLN ILE GLY GLU ASN ILE VAL CYS ARG VAL ILE CYS THR
SEQRES 3 A 151 THR GLY GLN ILE PRO ILE ARG ASP LEU SER ALA ASP ILE
SEQRES 4 A 151 SER GLN VAL LEU LYS GLU LYS ARG SER ILE LYS LYS VAL
SEQRES 5 A 151 TRP THR PHE GLY ARG ASN PRO ALA CYS ASP TYR HIS LEU
SEQRES 6 A 151 GLY ASN ILE SER ARG LEU SER ASN LYS HIS PHE GLN ILE
SEQRES 7 A 151 LEU LEU GLY GLU ASP GLY ASN LEU LEU LEU ASN ASP ILE
SEQRES 8 A 151 SER THR ASN GLY THR TRP LEU ASN GLY GLN LYS VAL GLU
SEQRES 9 A 151 LYS ASN SER ASN GLN LEU LEU SER GLN GLY ASP GLU ILE
SEQRES 10 A 151 THR VAL GLY VAL GLY VAL GLU SER ASP ILE LEU SER LEU
SEQRES 11 A 151 VAL ILE PHE ILE ASN ASP LYS PHE LYS GLN CYS LEU GLU
SEQRES 12 A 151 GLN ASN LYS VAL ASP ARG ILE ARG
SEQRES 1 B 10 ASN ASP PRO ASP TPO LEU GLU ILE TYR SER
MODRES 2A0T TPO B 169 THR PHOSPHOTHREONINE
HET TPO B 169 17
HETNAM TPO PHOSPHOTHREONINE
HETSYN TPO PHOSPHONOTHREONINE
FORMUL 2 TPO C4 H10 N O6 P
HELIX 1 1 THR A 15 GLN A 25 1 11
HELIX 2 2 ASP A 51 GLU A 58 1 8
HELIX 3 3 ASN A 148 ASN A 158 1 11
SHEET 1 A 6 ARG A 46 SER A 49 0
SHEET 2 A 6 ILE A 32 ILE A 37 -1 N CYS A 34 O LEU A 48
SHEET 3 A 6 LEU A 141 ILE A 147 -1 O VAL A 144 N ILE A 37
SHEET 4 A 6 GLU A 129 VAL A 132 -1 N VAL A 132 O LEU A 141
SHEET 5 A 6 THR A 109 LEU A 111 -1 N TRP A 110 O THR A 131
SHEET 6 A 6 GLN A 114 LYS A 115 -1 O GLN A 114 N LEU A 111
SHEET 1 B 5 TYR A 76 HIS A 77 0
SHEET 2 B 5 ILE A 62 GLY A 69 1 N THR A 67 O TYR A 76
SHEET 3 B 5 PHE A 89 GLY A 94 -1 O PHE A 89 N PHE A 68
SHEET 4 B 5 LEU A 99 ASP A 103 -1 O ASN A 102 N GLN A 90
SHEET 5 B 5 ASN A 121 LEU A 123 -1 O GLN A 122 N LEU A 101
LINK C ASP B 168 N TPO B 169 1555 1555 1.33
LINK C TPO B 169 N LEU B 170 1555 1555 1.33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes