Header list of 2a05.pdb file
Complete list - r 9 2 Bytes
HEADER SIGNALING PROTEIN 15-JUN-05 2A05
TITLE THE CYSTEINE-RICH SECRETORY PROTEIN DOMAIN OF TPX-1 IS RELATED TO ION
TITLE 2 CHANNEL TOXINS AND REGULATES RYANODINE RECEPTOR CA2+ SIGNALING
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYSTEINE-RICH SECRETORY PROTEIN-2;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 189-243;
COMPND 5 SYNONYM: TPX-1 CRISP, CRISP-2, TESTIS-SPECIFIC PROTEIN TPX-1;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3) PLACI;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRIEX4
KEYWDS 3 ALPHA HELICES, 5 DISULPHIDE BONDS, 2 DOMAINS, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 23
AUTHOR G.M.GIBBS,M.J.SCANLON,J.SWARBRICK,S.CURTIS,A.F.DULHUNTY,M.K.O'BRYAN
REVDAT 4 09-MAR-22 2A05 1 REMARK SEQADV
REVDAT 3 24-FEB-09 2A05 1 VERSN
REVDAT 2 24-JAN-06 2A05 1 JRNL
REVDAT 1 17-JAN-06 2A05 0
JRNL AUTH G.M.GIBBS,M.J.SCANLON,J.SWARBRICK,S.CURTIS,E.GALLANT,
JRNL AUTH 2 A.F.DULHUNTY,M.K.O'BRYAN
JRNL TITL THE CYSTEINE-RICH SECRETORY PROTEIN DOMAIN OF TPX-1 IS
JRNL TITL 2 RELATED TO ION CHANNEL TOXINS AND REGULATES RYANODINE
JRNL TITL 3 RECEPTOR CA2+ SIGNALING.
JRNL REF J.BIOL.CHEM. V. 281 4156 2006
JRNL REFN ISSN 0021-9258
JRNL PMID 16339766
JRNL DOI 10.1074/JBC.M506849200
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 1, CYANA 1.06, XPLOR-NIH 2.9.9
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT (CYANA), CLORE
REMARK 3 SCHWIETERS KUSZEWSKI TJANDRA (XPLOR-NIH)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NOES: 187 INTRA 251 SHORT 253 MED 188
REMARK 3 LONG. 78 CHEM SHIFTS
REMARK 4
REMARK 4 2A05 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-05.
REMARK 100 THE DEPOSITION ID IS D_1000033326.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 5.8
REMARK 210 IONIC STRENGTH : 1MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM TPX-1 U-15N 90% H2O 10% D2O;
REMARK 210 1MM TPX-1 90% H2O 10% D2O; 1MM
REMARK 210 TPX-1 100% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED TOCSY; 2D NOESY; 2D
REMARK 210 TOCSY; DQF-COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR 1, SPARKY 3.101
REMARK 210 METHOD USED : AUTOMATED RESONANCE ASSIGNMENT
REMARK 210 USING TORSION ANGLE DYNAMICS
REMARK 210 (CANDID), FURTHER REFINEMENT
REMARK 210 WITH CA AND CB CHEM SHIFTS AND
REMARK 210 DATABASE POTENTIALS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 49
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 23
REMARK 210 CONFORMERS, SELECTION CRITERIA : VIOLATIONS <0.2A NOE, TOTAL
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: STANDARD 2D/3D METHODS
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HD1 HIS A 225 H LEU A 227 1.14
REMARK 500 O ASN A 213 H LEU A 217 1.52
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 CYS A 196 88.84 -151.86
REMARK 500 1 ASN A 198 39.35 -159.73
REMARK 500 1 ALA A 221 -84.29 -134.73
REMARK 500 1 CYS A 236 -65.34 -99.29
REMARK 500 1 CYS A 238 -159.54 -124.44
REMARK 500 1 GLU A 239 31.64 -175.34
REMARK 500 1 ASP A 240 1.22 53.39
REMARK 500 2 PRO A 193 76.41 -43.63
REMARK 500 2 ASN A 198 43.13 -161.76
REMARK 500 2 ALA A 221 -86.51 -121.98
REMARK 500 2 CYS A 236 -65.51 -103.70
REMARK 500 2 GLU A 239 -154.38 -150.53
REMARK 500 3 PRO A 193 -81.30 -52.55
REMARK 500 3 GLU A 197 -89.93 -86.03
REMARK 500 3 ALA A 221 -85.84 -128.28
REMARK 500 3 HIS A 225 -102.20 -61.32
REMARK 500 3 GLU A 226 -53.74 -173.14
REMARK 500 3 CYS A 236 -62.57 -102.89
REMARK 500 3 CYS A 238 2.21 48.66
REMARK 500 3 LYS A 241 105.82 74.82
REMARK 500 4 ALA A 221 -84.45 -118.64
REMARK 500 4 GLU A 239 45.64 -146.00
REMARK 500 5 CYS A 192 76.07 -152.07
REMARK 500 5 CYS A 196 102.74 -164.88
REMARK 500 5 ASN A 198 32.04 -141.80
REMARK 500 5 ASN A 203 -6.92 -147.47
REMARK 500 5 CYS A 205 96.76 -167.38
REMARK 500 5 ALA A 221 -84.98 -130.63
REMARK 500 5 CYS A 236 -68.33 -106.60
REMARK 500 5 ASP A 240 -12.14 -49.26
REMARK 500 5 LYS A 241 99.85 93.39
REMARK 500 6 PRO A 193 -79.13 -63.69
REMARK 500 6 ASN A 198 44.55 -161.43
REMARK 500 6 ALA A 221 -79.38 -76.21
REMARK 500 6 GLU A 239 93.67 -177.47
REMARK 500 7 CYS A 189 35.76 -69.50
REMARK 500 7 ASN A 195 55.90 -140.88
REMARK 500 7 ASN A 198 -19.01 -43.12
REMARK 500 7 LEU A 200 -153.76 38.80
REMARK 500 7 ALA A 221 -94.30 -115.97
REMARK 500 7 CYS A 236 -67.82 -103.12
REMARK 500 7 GLU A 239 -25.05 -175.96
REMARK 500 8 ASN A 198 42.88 -161.87
REMARK 500 8 ALA A 221 -85.65 -121.43
REMARK 500 8 CYS A 236 -64.10 -100.79
REMARK 500 8 GLU A 239 85.36 179.79
REMARK 500 8 ASP A 240 85.13 57.41
REMARK 500 9 ALA A 190 -67.42 -145.12
REMARK 500 9 ASN A 198 43.82 -159.15
REMARK 500 9 SER A 204 59.97 -146.95
REMARK 500
REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 2A05 A 189 243 UNP P16563 CRIS2_MOUSE 189 243
SEQADV 2A05 GLY A 187 UNP P16563 CLONING ARTIFACT
SEQADV 2A05 SER A 188 UNP P16563 CLONING ARTIFACT
SEQRES 1 A 57 GLY SER CYS ALA SER CYS PRO ASN ASN CYS GLU ASN GLY
SEQRES 2 A 57 LEU CYS THR ASN SER CYS ASP PHE GLU ASP LEU LEU SER
SEQRES 3 A 57 ASN CYS GLU SER LEU LYS THR SER ALA GLY CYS LYS HIS
SEQRES 4 A 57 GLU LEU LEU LYS THR LYS CYS GLN ALA THR CYS LEU CYS
SEQRES 5 A 57 GLU ASP LYS ILE HIS
HELIX 1 1 ASN A 213 ALA A 221 1 9
HELIX 2 2 LEU A 227 CYS A 232 1 6
HELIX 3 3 CYS A 232 LEU A 237 1 6
SSBOND 1 CYS A 189 CYS A 196 1555 1555 2.02
SSBOND 2 CYS A 192 CYS A 201 1555 1555 2.02
SSBOND 3 CYS A 205 CYS A 238 1555 1555 2.02
SSBOND 4 CYS A 214 CYS A 232 1555 1555 2.02
SSBOND 5 CYS A 223 CYS A 236 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 9 2 Bytes