Header list of 1zw7.pdb file
Complete list - t 20 2 Bytes
HEADER STRUCTURAL PROTEIN 03-JUN-05 1ZW7
TITLE ELIMINATION OF THE C-CAP IN UBIQUITIN STRUCTURE, DYNAMICS AND
TITLE 2 THERMODYNAMIC CONSEQUENCES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: UBIQUITIN;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 GENE: UBI1, RPL40A;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS DYNAMICS, THERMODYNAMICS, STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 21
AUTHOR D.N.ERMOLENKO,B.DANGI,A.M.GRONENBORN,G.I.MAKHATADZE
REVDAT 5 20-OCT-21 1ZW7 1 REMARK SEQADV
REVDAT 4 24-FEB-09 1ZW7 1 VERSN
REVDAT 3 06-MAR-07 1ZW7 1 JRNL
REVDAT 2 16-JAN-07 1ZW7 1 JRNL
REVDAT 1 16-MAY-06 1ZW7 0
JRNL AUTH D.N.ERMOLENKO,B.DANGI,A.GVRITISHVILI,A.M.GRONENBORN,
JRNL AUTH 2 G.I.MAKHATADZE
JRNL TITL ELIMINATION OF THE C-CAP IN UBIQUITIN-STRUCTURE, DYNAMICS
JRNL TITL 2 AND THERMODYNAMIC CONSEQUENCES.
JRNL REF BIOPHYS.CHEM. V. 126 25 2007
JRNL REFN ISSN 0301-4622
JRNL PMID 16713063
JRNL DOI 10.1016/J.BPC.2006.03.017
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.0, CNS 1.0
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE
REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,
REMARK 3 WARREN (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,
REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1ZW7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-05.
REMARK 100 THE DEPOSITION ID IS D_1000033194.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 5
REMARK 210 IONIC STRENGTH : 30 MM ACTATE
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1-2 MM OF APPROPRIATELY LABELED
REMARK 210 MUTANT UBIQUITIN
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-15N HSQC; 3D HNCACB;
REMARK 210 CBCA(CO)NH; HNCO; HBHA(CO)NH
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : STRUCTURE CALCULATIONS WERE
REMARK 210 PERFORMED USING CNS VERSION 1.0
REMARK 210 ON AN SGI PLATFORM. THE
REMARK 210 REFINEMENT PROTOCOL FOR
REMARK 210 ANNEALING INVOLVED TORSION ANGLE
REMARK 210 HEATING (100 K, 1000 STEPS)
REMARK 210 FOLLOWED BY COOLING IN TORSION
REMARK 210 (100 K, 5000 STEPS) AND
REMARK 210 CARTESIAN SPACE (1000 K, 10,000
REMARK 210 STEPS).
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 50
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21
REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH
REMARK 210 EXPERIMENTAL NOESY SPECTRUM
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLN A 31 32.92 -90.38
REMARK 500 1 ALA A 32 -70.22 -117.37
REMARK 500 1 PHE A 45 34.90 -89.30
REMARK 500 1 ALA A 46 -66.71 66.70
REMARK 500 1 LYS A 63 161.64 -33.66
REMARK 500 1 GLU A 64 77.91 66.69
REMARK 500 1 ARG A 74 15.28 -149.81
REMARK 500 2 LYS A 29 1.41 -65.04
REMARK 500 2 ALA A 46 -60.40 70.96
REMARK 500 2 ILE A 61 -159.99 -100.52
REMARK 500 2 LYS A 63 167.00 -39.83
REMARK 500 2 GLU A 64 82.28 77.27
REMARK 500 2 LEU A 71 68.71 -113.64
REMARK 500 2 ARG A 74 14.51 -146.01
REMARK 500 3 ILE A 30 31.75 -78.05
REMARK 500 3 ALA A 32 -73.95 -108.83
REMARK 500 3 PRO A 34 -158.67 -81.52
REMARK 500 3 ALA A 46 -61.35 69.12
REMARK 500 3 LYS A 63 164.64 -42.77
REMARK 500 3 GLU A 64 81.16 68.50
REMARK 500 3 ARG A 74 18.65 -149.53
REMARK 500 4 GLN A 2 116.65 -161.68
REMARK 500 4 ILE A 30 35.08 -79.00
REMARK 500 4 ALA A 33 131.13 66.55
REMARK 500 4 PRO A 34 -73.98 -82.42
REMARK 500 4 ALA A 46 -34.44 70.54
REMARK 500 4 GLN A 62 -157.10 -61.13
REMARK 500 4 GLU A 64 84.97 70.84
REMARK 500 4 ARG A 74 17.22 -149.46
REMARK 500 5 PRO A 34 -95.47 -69.98
REMARK 500 5 ALA A 46 -61.59 66.28
REMARK 500 5 TYR A 59 36.07 -141.54
REMARK 500 5 GLN A 62 -157.25 -69.07
REMARK 500 5 GLU A 64 85.44 73.10
REMARK 500 5 ARG A 74 14.88 -143.71
REMARK 500 6 GLN A 2 125.64 -171.85
REMARK 500 6 LEU A 8 34.32 -76.88
REMARK 500 6 ALA A 46 -61.64 69.29
REMARK 500 6 TYR A 59 36.44 -143.19
REMARK 500 6 LYS A 63 136.92 -39.12
REMARK 500 6 GLU A 64 84.67 75.83
REMARK 500 6 SER A 65 117.32 -160.95
REMARK 500 6 ARG A 74 16.09 -173.29
REMARK 500 7 GLN A 31 32.73 -89.71
REMARK 500 7 ALA A 32 -82.27 -105.47
REMARK 500 7 ALA A 46 -58.15 71.00
REMARK 500 7 TYR A 59 36.92 -146.39
REMARK 500 7 GLN A 62 -153.96 -85.36
REMARK 500 7 GLU A 64 76.62 66.06
REMARK 500 7 LEU A 71 66.45 -115.90
REMARK 500
REMARK 500 THIS ENTRY HAS 158 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1ZW7 A 1 76 UNP P61864 UBIQ_YEAST 1 76
SEQADV 1ZW7 ALA A 11 UNP P61864 LYS 11 ENGINEERED MUTATION
SEQADV 1ZW7 ALA A 32 UNP P61864 ASP 32 ENGINEERED MUTATION
SEQADV 1ZW7 ALA A 33 UNP P61864 LYS 33 ENGINEERED MUTATION
SEQADV 1ZW7 PRO A 34 UNP P61864 GLU 34 ENGINEERED MUTATION
SEQADV 1ZW7 GLU A 42 UNP P61864 ARG 42 ENGINEERED MUTATION
SEQADV 1ZW7 HIS A 77 UNP P61864 EXPRESSION TAG
SEQADV 1ZW7 HIS A 78 UNP P61864 EXPRESSION TAG
SEQADV 1ZW7 HIS A 79 UNP P61864 EXPRESSION TAG
SEQADV 1ZW7 HIS A 80 UNP P61864 EXPRESSION TAG
SEQADV 1ZW7 HIS A 81 UNP P61864 EXPRESSION TAG
SEQADV 1ZW7 HIS A 82 UNP P61864 EXPRESSION TAG
SEQRES 1 A 82 MET GLN ILE PHE VAL LYS THR LEU THR GLY ALA THR ILE
SEQRES 2 A 82 THR LEU GLU VAL GLU SER SER ASP THR ILE ASP ASN VAL
SEQRES 3 A 82 LYS SER LYS ILE GLN ALA ALA PRO GLY ILE PRO PRO ASP
SEQRES 4 A 82 GLN GLN GLU LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP
SEQRES 5 A 82 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER
SEQRES 6 A 82 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HIS HIS
SEQRES 7 A 82 HIS HIS HIS HIS
HELIX 1 1 THR A 22 LYS A 29 1 8
HELIX 2 2 PRO A 37 GLN A 41 5 5
HELIX 3 3 LEU A 56 ASN A 60 5 5
SHEET 1 A 4 ILE A 13 LEU A 15 0
SHEET 2 A 4 ILE A 3 LYS A 6 -1 N VAL A 5 O ILE A 13
SHEET 3 A 4 THR A 66 VAL A 70 1 O LEU A 67 N PHE A 4
SHEET 4 A 4 GLU A 42 LEU A 43 -1 N GLU A 42 O VAL A 70
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - t 20 2 Bytes