Header list of 1zu2.pdb file
Complete list - r 2 2 Bytes
HEADER TRANSPORT PROTEIN 30-MAY-05 1ZU2
TITLE SOLUTION NMR STRUCTURE OF THE PLANT TOM20 MITOCHONDRIAL IMPORT
TITLE 2 RECEPTOR FROM ARABIDOPSIS THALIANA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-3;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: ISOFORM-3 CYTOSOLIC RECEPTOR DOMAIN;
COMPND 5 SYNONYM: TRANSLOCASE OF OUTER MEMBRANE 20 KDA ISOFORM 3;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA;
SOURCE 3 ORGANISM_COMMON: THALE CRESS;
SOURCE 4 ORGANISM_TAXID: 3702;
SOURCE 5 GENE: TOM20-3;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA [BL21(DE3) DERIVED];
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-3
KEYWDS TPR, TETRATRICOPEPTIDE REPEAT LIKE, TPR-LIKE, TRANSPORT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.J.PERRY,J.M.HULETT,T.LITHGOW,P.R.GOOLEY
REVDAT 4 02-MAR-22 1ZU2 1 REMARK SEQADV
REVDAT 3 24-FEB-09 1ZU2 1 VERSN
REVDAT 2 21-FEB-06 1ZU2 1 JRNL
REVDAT 1 06-DEC-05 1ZU2 0
JRNL AUTH A.J.PERRY,J.M.HULETT,V.A.LIKIC,T.LITHGOW,P.R.GOOLEY
JRNL TITL CONVERGENT EVOLUTION OF RECEPTORS FOR PROTEIN IMPORT INTO
JRNL TITL 2 MITOCHONDRIA
JRNL REF CURR.BIOL. V. 16 221 2006
JRNL REFN ISSN 0960-9822
JRNL PMID 16461275
JRNL DOI 10.1016/J.CUB.2005.12.034
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH A.J.PERRY,J.M.HULETT,T.LITHGOW,P.R.GOOLEY
REMARK 1 TITL LETTER TO THE EDITOR: 1H, 13C AND 15N RESONANCE ASSIGNMENTS
REMARK 1 TITL 2 OF THE CYTOSOLIC DOMAIN OF TOM20 FROM ARABIDOPSIS THALIANA
REMARK 1 REF TO BE PUBLISHED
REMARK 1 REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 4.1C, CYANA 1.0.7
REMARK 3 AUTHORS : VARIAN INC. (VNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE CANDID SOFTWARE WAS USED FOR
REMARK 3 INITIAL AUTOMATIC NOE ASSIGNMENT. STRUCTURES ARE BASED ON 1629
REMARK 3 NOE-DERIVED UPPER DISTANCE CONSTRAINTS (47 INTRA RESIDUE), 136
REMARK 3 DISTANCE RESTRAINTS FROM HYDROGEN BONDS, REFINEMENT AGAINST 129
REMARK 3 J(HNHA) COUPLING CONSTANTS AND 234 PHI/PSI DIHEDRAL ANGLE
REMARK 3 CONSTRAINTS FROM TALOS.
REMARK 4
REMARK 4 1ZU2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-05.
REMARK 100 THE DEPOSITION ID IS D_1000033118.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.4
REMARK 210 IONIC STRENGTH : 150MM SODIUM CHLORIDE
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM TOM20 U-15N,13C, 20MM SODIUM
REMARK 210 PHOSPHATE BUFFER, 150MM SODIUM
REMARK 210 CHLORIDE, 0.02 %(W/V) SODIUM
REMARK 210 AZIDE, 1MM DITHIOTHREITOL, 1MM
REMARK 210 EDTA, 3MM
REMARK 210 PHENYLMETHYLSULPHONYLFLUORIDE,
REMARK 210 90 % H2O, 10 % D2O; 1MM TOM20 U-
REMARK 210 15N, 20MM SODIUM PHOSPHATE
REMARK 210 BUFFER, 150MM SODIUM CHLORIDE,
REMARK 210 0.02 %(W/V) SODIUM AZIDE, 1MM
REMARK 210 DITHIOTHREITOL, 1MM EDTA, 3MM
REMARK 210 PHENYLMETHYLSULPHONYLFLUORIDE,
REMARK 210 90 % H2O, 10 % D2O; 1MM TOM20 U-
REMARK 210 15N,13C, 20MM SODIUM PHOSPHATE
REMARK 210 BUFFER, 150MM SODIUM CHLORIDE,
REMARK 210 0.02 %(W/V) SODIUM AZIDE, 1MM
REMARK 210 DITHIOTHREITOL, 1MM EDTA, 3MM
REMARK 210 PHENYLMETHYLSULPHONYLFLUORIDE,
REMARK 210 95 % D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; HNHA; 3D-13C-
REMARK 210 SEPARATED_NOESY (AROMATICS)
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 1.1, SPARKY 3.111, CYANA
REMARK 210 1.0.7, CANDID 1.0
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: STRUCTURE CONTAINS 5 NON-NATIVE RESIDUES AT THE N-TERMINUS
REMARK 210 (FROM FUSION SYSTEM PROTEASE SITE) AND 8 NON-NATIVE RESIDUES AT
REMARK 210 THE C-TERMINUS FROM A POLYHISTIDINE TAG.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O GLU A 76 H CYS A 80 1.44
REMARK 500 O GLU A 95 H LYS A 99 1.49
REMARK 500 O LYS A 131 H LEU A 135 1.50
REMARK 500 O ARG A 17 H GLU A 21 1.51
REMARK 500 O ILE A 16 H ALA A 20 1.52
REMARK 500 O ILE A 50 H LYS A 54 1.54
REMARK 500 O GLN A 134 H GLU A 138 1.54
REMARK 500 O TRP A 79 H ASN A 83 1.58
REMARK 500 O VAL A 40 H LEU A 44 1.58
REMARK 500 O ASP A 94 H ALA A 98 1.58
REMARK 500 O ALA A 137 H LYS A 141 1.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LEU A -2 176.55 62.29
REMARK 500 1 MET A 1 90.29 55.33
REMARK 500 1 ASP A 2 -51.21 -173.53
REMARK 500 1 THR A 3 -41.45 -166.18
REMARK 500 1 GLU A 4 154.06 65.00
REMARK 500 1 GLU A 6 -42.48 86.05
REMARK 500 1 ASN A 27 90.39 -169.46
REMARK 500 1 ASP A 30 98.75 -64.26
REMARK 500 1 SER A 49 150.32 -44.34
REMARK 500 1 LYS A 74 77.51 -67.91
REMARK 500 1 ASP A 94 85.30 -59.48
REMARK 500 1 LEU A 144 86.37 -154.16
REMARK 500 1 SER A 147 157.16 -41.52
REMARK 500 1 HIS A 148 -64.68 -103.76
REMARK 500 2 MET A 1 144.31 63.62
REMARK 500 2 ASP A 2 51.19 74.23
REMARK 500 2 THR A 5 18.09 -145.74
REMARK 500 2 GLU A 6 -23.86 89.33
REMARK 500 2 ASN A 27 86.12 -169.24
REMARK 500 2 ASP A 30 99.55 -68.48
REMARK 500 2 SER A 49 154.33 -47.43
REMARK 500 2 LYS A 74 73.27 -66.93
REMARK 500 2 ASP A 94 85.34 -59.36
REMARK 500 2 LEU A 144 -59.55 74.16
REMARK 500 2 SER A 147 131.68 67.55
REMARK 500 2 HIS A 148 87.77 58.66
REMARK 500 2 HIS A 149 159.45 60.49
REMARK 500 2 HIS A 150 -65.45 -120.58
REMARK 500 2 HIS A 151 -64.37 -138.24
REMARK 500 3 LEU A -2 -66.24 -156.61
REMARK 500 3 ASP A 2 179.61 59.28
REMARK 500 3 GLU A 4 135.82 61.83
REMARK 500 3 THR A 5 -60.72 -158.98
REMARK 500 3 GLU A 6 -48.64 -169.97
REMARK 500 3 ASN A 27 91.80 -169.38
REMARK 500 3 ASP A 30 99.13 -64.16
REMARK 500 3 HIS A 48 -92.39 -78.78
REMARK 500 3 SER A 49 148.83 172.04
REMARK 500 3 LYS A 74 74.90 -65.72
REMARK 500 3 ASP A 94 85.63 -60.87
REMARK 500 3 GLN A 116 90.69 -160.06
REMARK 500 3 LEU A 144 -62.09 -148.84
REMARK 500 3 HIS A 148 -76.74 65.29
REMARK 500 4 LEU A -2 86.80 41.25
REMARK 500 4 MET A 1 98.87 58.88
REMARK 500 4 THR A 5 -56.46 -145.61
REMARK 500 4 GLU A 6 -24.78 89.51
REMARK 500 4 ASN A 27 82.58 -169.66
REMARK 500 4 ASP A 94 86.39 -59.06
REMARK 500 4 GLN A 116 89.24 -156.16
REMARK 500
REMARK 500 THIS ENTRY HAS 262 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1ZU2 A 1 145 UNP P82874 TO203_ARATH 1 145
SEQADV 1ZU2 GLY A -4 UNP P82874 CLONING ARTIFACT
SEQADV 1ZU2 PRO A -3 UNP P82874 CLONING ARTIFACT
SEQADV 1ZU2 LEU A -2 UNP P82874 CLONING ARTIFACT
SEQADV 1ZU2 GLY A -1 UNP P82874 CLONING ARTIFACT
SEQADV 1ZU2 SER A 0 UNP P82874 CLONING ARTIFACT
SEQADV 1ZU2 GLY A 146 UNP P82874 EXPRESSION TAG
SEQADV 1ZU2 SER A 147 UNP P82874 EXPRESSION TAG
SEQADV 1ZU2 HIS A 148 UNP P82874 EXPRESSION TAG
SEQADV 1ZU2 HIS A 149 UNP P82874 EXPRESSION TAG
SEQADV 1ZU2 HIS A 150 UNP P82874 EXPRESSION TAG
SEQADV 1ZU2 HIS A 151 UNP P82874 EXPRESSION TAG
SEQADV 1ZU2 HIS A 152 UNP P82874 EXPRESSION TAG
SEQADV 1ZU2 HIS A 153 UNP P82874 EXPRESSION TAG
SEQRES 1 A 158 GLY PRO LEU GLY SER MET ASP THR GLU THR GLU PHE ASP
SEQRES 2 A 158 ARG ILE LEU LEU PHE GLU GLN ILE ARG GLN ASP ALA GLU
SEQRES 3 A 158 ASN THR TYR LYS SER ASN PRO LEU ASP ALA ASP ASN LEU
SEQRES 4 A 158 THR ARG TRP GLY GLY VAL LEU LEU GLU LEU SER GLN PHE
SEQRES 5 A 158 HIS SER ILE SER ASP ALA LYS GLN MET ILE GLN GLU ALA
SEQRES 6 A 158 ILE THR LYS PHE GLU GLU ALA LEU LEU ILE ASP PRO LYS
SEQRES 7 A 158 LYS ASP GLU ALA VAL TRP CYS ILE GLY ASN ALA TYR THR
SEQRES 8 A 158 SER PHE ALA PHE LEU THR PRO ASP GLU THR GLU ALA LYS
SEQRES 9 A 158 HIS ASN PHE ASP LEU ALA THR GLN PHE PHE GLN GLN ALA
SEQRES 10 A 158 VAL ASP GLU GLN PRO ASP ASN THR HIS TYR LEU LYS SER
SEQRES 11 A 158 LEU GLU MET THR ALA LYS ALA PRO GLN LEU HIS ALA GLU
SEQRES 12 A 158 ALA TYR LYS GLN GLY LEU GLY GLY SER HIS HIS HIS HIS
SEQRES 13 A 158 HIS HIS
HELIX 1 1 GLU A 6 ASN A 27 1 22
HELIX 2 2 ASP A 30 HIS A 48 1 19
HELIX 3 3 SER A 49 ASP A 71 1 23
HELIX 4 4 LYS A 74 THR A 92 1 19
HELIX 5 5 ASP A 94 GLN A 116 1 23
HELIX 6 6 ASN A 119 LYS A 131 1 13
HELIX 7 7 LYS A 131 GLN A 142 1 12
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes