Header list of 1zc1.pdb file
Complete list - r 2 2 Bytes
HEADER PROTEIN TURNOVER 10-APR-05 1ZC1
TITLE UFD1 EXHIBITS THE AAA-ATPASE FOLD WITH TWO DISTINCT UBIQUITIN
TITLE 2 INTERACTION SITES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: UBIQUITIN FUSION DEGRADATION PROTEIN 1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: N DOMAIN, RESIDUES 1-208;
COMPND 5 SYNONYM: UB FUSION PROTEIN 1, POLYMERASE-INTERACTING PROTEIN 3;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 GENE: UFD1, PIP3;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS UFD1, DOUBLE-PSI-BETA-BARREL, PROTEIN TURNOVER
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR S.PARK,R.ISAACSON,H.T.KIM,P.A.SILVER,G.WAGNER
REVDAT 3 02-MAR-22 1ZC1 1 REMARK
REVDAT 2 24-FEB-09 1ZC1 1 VERSN
REVDAT 1 26-JUL-05 1ZC1 0
JRNL AUTH S.PARK,R.ISAACSON,H.T.KIM,P.A.SILVER,G.WAGNER
JRNL TITL UFD1 EXHIBITS THE AAA-ATPASE FOLD WITH TWO DISTINCT
JRNL TITL 2 UBIQUITIN INTERACTION SITES
JRNL REF STRUCTURE V. 13 995 2005
JRNL REFN ISSN 0969-2126
JRNL PMID 16004872
JRNL DOI 10.1016/J.STR.2005.04.013
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.0, CNS 1.0
REMARK 3 AUTHORS : BRUNGER, A. (CNS), BRUNGER, A. (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1ZC1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-05.
REMARK 100 THE DEPOSITION ID IS D_1000032550.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 307
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 20 MM PHOSPHATE 50MM NACL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 0.2MM UFD1
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ
REMARK 210 SPECTROMETER MODEL : DRX; INOVA
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LEU A 85 -78.83 -92.03
REMARK 500 1 LEU A 121 108.32 64.57
REMARK 500 1 SER A 131 135.14 66.79
REMARK 500 1 GLU A 189 -79.94 -90.08
REMARK 500 1 THR A 190 41.41 -168.05
REMARK 500 2 LEU A 85 -79.88 -91.84
REMARK 500 2 SER A 131 137.21 67.87
REMARK 500 2 GLU A 189 -79.94 -90.02
REMARK 500 2 THR A 190 42.87 -161.18
REMARK 500 3 LEU A 85 -80.03 -93.38
REMARK 500 3 LEU A 121 100.77 70.11
REMARK 500 3 VAL A 132 27.21 36.84
REMARK 500 3 VAL A 187 67.83 -170.11
REMARK 500 3 PRO A 205 82.56 -61.86
REMARK 500 4 LEU A 85 -79.07 -90.14
REMARK 500 4 PRO A 108 0.09 -62.61
REMARK 500 4 LEU A 121 92.68 61.23
REMARK 500 4 SER A 131 160.61 56.77
REMARK 500 4 VAL A 187 64.91 -155.05
REMARK 500 5 LEU A 85 -78.16 -91.33
REMARK 500 5 SER A 131 130.68 69.55
REMARK 500 5 VAL A 187 -55.47 -178.16
REMARK 500 5 ILE A 188 -1.84 68.66
REMARK 500 6 PRO A 108 -3.41 -57.75
REMARK 500 6 SER A 131 166.97 71.05
REMARK 500 6 GLU A 189 -79.79 -89.97
REMARK 500 6 THR A 190 -158.70 -169.84
REMARK 500 6 PRO A 205 95.10 -56.70
REMARK 500 7 PRO A 18 160.79 -48.15
REMARK 500 7 LEU A 85 -77.39 -92.62
REMARK 500 7 ILE A 88 -5.73 -141.83
REMARK 500 7 LEU A 121 100.39 67.96
REMARK 500 7 SER A 131 133.28 70.17
REMARK 500 7 GLU A 189 -79.96 -91.03
REMARK 500 7 THR A 190 30.78 -168.97
REMARK 500 8 LEU A 85 -79.05 -92.22
REMARK 500 8 PRO A 108 -1.97 -59.93
REMARK 500 8 VAL A 132 24.36 41.95
REMARK 500 8 VAL A 187 121.36 77.06
REMARK 500 8 ASP A 191 94.57 70.47
REMARK 500 9 ASN A 74 139.59 62.27
REMARK 500 9 LEU A 85 -79.58 -92.75
REMARK 500 9 SER A 131 146.76 60.98
REMARK 500 9 LEU A 174 -70.46 -84.04
REMARK 500 9 ILE A 188 -67.81 -97.18
REMARK 500 9 PRO A 205 107.50 -57.90
REMARK 500 10 PRO A 18 167.45 -49.60
REMARK 500 10 ASN A 74 148.46 61.77
REMARK 500 10 LEU A 85 -79.21 -89.99
REMARK 500 10 SER A 131 131.05 75.90
REMARK 500
REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700
REMARK 700 SHEET
REMARK 700 THE AUTOMATICALLY GENERATED BETA SHEET NAMING IN THIS PDB
REMARK 700 FILE IS SLIGHTLY DIFFERENT FROM THOSE IN THE CITATION
DBREF 1ZC1 A 1 208 UNP P53044 UFD1_YEAST 1 208
SEQRES 1 A 208 MET PHE SER GLY PHE SER SER PHE GLY GLY GLY ASN GLY
SEQRES 2 A 208 PHE VAL ASN MET PRO GLN THR PHE GLU GLU PHE PHE ARG
SEQRES 3 A 208 CYS TYR PRO ILE ALA MET MET ASN ASP ARG ILE ARG LYS
SEQRES 4 A 208 ASP ASP ALA ASN PHE GLY GLY LYS ILE PHE LEU PRO PRO
SEQRES 5 A 208 SER ALA LEU SER LYS LEU SER MET LEU ASN ILE ARG TYR
SEQRES 6 A 208 PRO MET LEU PHE LYS LEU THR ALA ASN GLU THR GLY ARG
SEQRES 7 A 208 VAL THR HIS GLY GLY VAL LEU GLU PHE ILE ALA GLU GLU
SEQRES 8 A 208 GLY ARG VAL TYR LEU PRO GLN TRP MET MET GLU THR LEU
SEQRES 9 A 208 GLY ILE GLN PRO GLY SER LEU LEU GLN ILE SER SER THR
SEQRES 10 A 208 ASP VAL PRO LEU GLY GLN PHE VAL LYS LEU GLU PRO GLN
SEQRES 11 A 208 SER VAL ASP PHE LEU ASP ILE SER ASP PRO LYS ALA VAL
SEQRES 12 A 208 LEU GLU ASN VAL LEU ARG ASN PHE SER THR LEU THR VAL
SEQRES 13 A 208 ASP ASP VAL ILE GLU ILE SER TYR ASN GLY LYS THR PHE
SEQRES 14 A 208 LYS ILE LYS ILE LEU GLU VAL LYS PRO GLU SER SER SER
SEQRES 15 A 208 LYS SER ILE CYS VAL ILE GLU THR ASP LEU VAL THR ASP
SEQRES 16 A 208 PHE ALA PRO PRO VAL GLY TYR VAL GLU PRO ASP TYR LYS
HELIX 1 1 ASP A 40 PHE A 44 5 5
HELIX 2 2 PRO A 52 MET A 60 1 9
HELIX 3 3 GLN A 98 LEU A 104 1 7
HELIX 4 4 SER A 131 LEU A 135 1 5
HELIX 5 5 PRO A 140 ASN A 150 1 11
SHEET 1 A 7 GLN A 19 PRO A 29 0
SHEET 2 A 7 ARG A 93 LEU A 96 1 O VAL A 94 N TYR A 28
SHEET 3 A 7 LYS A 47 LEU A 50 -1 N PHE A 49 O TYR A 95
SHEET 4 A 7 VAL A 79 PHE A 87 1 O LEU A 85 N ILE A 48
SHEET 5 A 7 PHE A 69 THR A 72 -1 N LEU A 71 O THR A 80
SHEET 6 A 7 LEU A 111 ASP A 118 -1 O SER A 115 N LYS A 70
SHEET 7 A 7 GLN A 19 PRO A 29 -1 N PHE A 21 O SER A 116
SHEET 1 B 4 VAL A 159 TYR A 164 0
SHEET 2 B 4 LYS A 167 LYS A 177 -1 O PHE A 169 N ILE A 162
SHEET 3 B 4 PHE A 124 GLU A 128 -1 N PHE A 124 O LYS A 177
SHEET 4 B 4 VAL A 193 PHE A 196 1 O VAL A 193 N VAL A 125
SHEET 1 C 2 LEU A 154 THR A 155 0
SHEET 2 C 2 SER A 184 ILE A 185 -1 O ILE A 185 N LEU A 154
CISPEP 1 TYR A 65 PRO A 66 1 0.86
CISPEP 2 TYR A 65 PRO A 66 2 0.53
CISPEP 3 TYR A 65 PRO A 66 3 0.70
CISPEP 4 TYR A 65 PRO A 66 4 0.73
CISPEP 5 TYR A 65 PRO A 66 5 0.73
CISPEP 6 TYR A 65 PRO A 66 6 0.67
CISPEP 7 TYR A 65 PRO A 66 7 0.68
CISPEP 8 TYR A 65 PRO A 66 8 0.72
CISPEP 9 TYR A 65 PRO A 66 9 0.12
CISPEP 10 TYR A 65 PRO A 66 10 0.42
CISPEP 11 TYR A 65 PRO A 66 11 0.73
CISPEP 12 TYR A 65 PRO A 66 12 0.32
CISPEP 13 TYR A 65 PRO A 66 13 0.62
CISPEP 14 TYR A 65 PRO A 66 14 0.41
CISPEP 15 TYR A 65 PRO A 66 15 0.90
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes