Header list of 1z9e.pdb file
Complete list - r 2 2 Bytes
HEADER PROTEIN BINDING/TRANSCRIPTION 01-APR-05 1Z9E
TITLE SOLUTION STRUCTURE OF THE HIV-1 INTEGRASE-BINDING DOMAIN IN LEDGF/P75
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PC4 AND SFRS1 INTERACTING PROTEIN 2;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 347-471 CONTAINS: HIV-1
COMPND 5 INTEGRASE-BINDING DOMAIN (RESIDUES 347-429);
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PSIP1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1
KEYWDS HEAT REPEAT-LIKE, LEDGF, PROTEIN BINDING-TRANSCRIPTION COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR P.CHEREPANOV,Z.-Y.J.SUN,S.RAHMAN,G.MAERTENS,G.WAGNER,A.ENGELMAN
REVDAT 5 02-MAR-22 1Z9E 1 REMARK SEQADV
REVDAT 4 24-FEB-09 1Z9E 1 VERSN
REVDAT 3 01-NOV-05 1Z9E 1 KEYWDS
REVDAT 2 05-JUL-05 1Z9E 1 JRNL
REVDAT 1 17-MAY-05 1Z9E 0
JRNL AUTH P.CHEREPANOV,Z.-Y.J.SUN,S.RAHMAN,G.MAERTENS,G.WAGNER,
JRNL AUTH 2 A.ENGELMAN
JRNL TITL SOLUTION STRUCTURE OF THE HIV-1 INTEGRASE-BINDING DOMAIN IN
JRNL TITL 2 LEDGF/P75
JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 526 2005
JRNL REFN ISSN 1545-9993
JRNL PMID 15895093
JRNL DOI 10.1038/NSMB937
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.851, X-PLOR 3.851
REMARK 3 AUTHORS : BRUNGER, A. (X-PLOR), BRUNGER, A. (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1Z9E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-05.
REMARK 100 THE DEPOSITION ID IS D_1000032463.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.25
REMARK 210 IONIC STRENGTH : 100 MM NACL, 50 MM POSPHATE
REMARK 210 BUFFER
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.7 MM PROTEIN, 100 MM NACL, 50
REMARK 210 MM PHOSPHATE BUFFER, 90% H2O, 10%
REMARK 210 D2O; 0.7 MM PROTEIN, 100 MM
REMARK 210 NACL, 38 MM NA2HPO4, 12 MM
REMARK 210 NAH2PO4, 100% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; 3D_13C-
REMARK 210 SEPARATED_NOESY; HNCA, HNCOCA,
REMARK 210 HNCO, HNCACO, HNCACB, HNCOCACB,
REMARK 210 HCCONH, CCONH; HCCH-TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 20
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-15
REMARK 465 RES C SSSEQI
REMARK 465 GLY A 345
REMARK 465 SER A 346
REMARK 465 GLY A 430
REMARK 465 GLU A 431
REMARK 465 GLY A 432
REMARK 465 ASP A 433
REMARK 465 SER A 434
REMARK 465 VAL A 435
REMARK 465 ILE A 436
REMARK 465 THR A 437
REMARK 465 GLN A 438
REMARK 465 VAL A 439
REMARK 465 LEU A 440
REMARK 465 ASN A 441
REMARK 465 LYS A 442
REMARK 465 SER A 443
REMARK 465 LEU A 444
REMARK 465 ALA A 445
REMARK 465 GLU A 446
REMARK 465 GLN A 447
REMARK 465 ARG A 448
REMARK 465 GLN A 449
REMARK 465 HIS A 450
REMARK 465 GLU A 451
REMARK 465 GLU A 452
REMARK 465 ALA A 453
REMARK 465 ASN A 454
REMARK 465 LYS A 455
REMARK 465 THR A 456
REMARK 465 LYS A 457
REMARK 465 ASP A 458
REMARK 465 GLN A 459
REMARK 465 GLY A 460
REMARK 465 LYS A 461
REMARK 465 LYS A 462
REMARK 465 GLY A 463
REMARK 465 PRO A 464
REMARK 465 ASN A 465
REMARK 465 LYS A 466
REMARK 465 LYS A 467
REMARK 465 LEU A 468
REMARK 465 GLU A 469
REMARK 465 LYS A 470
REMARK 465 GLU A 471
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LEU A 363 39.66 -94.85
REMARK 500 1 ASN A 367 41.00 -150.86
REMARK 500 1 LEU A 368 96.15 -40.83
REMARK 500 1 LEU A 383 107.30 -55.97
REMARK 500 2 LEU A 363 39.67 -94.31
REMARK 500 2 ASN A 367 39.31 -150.53
REMARK 500 2 LEU A 368 97.44 -40.33
REMARK 500 2 LEU A 383 108.12 -57.48
REMARK 500 2 GLN A 384 93.93 -69.49
REMARK 500 3 LEU A 363 39.47 -93.33
REMARK 500 3 ASN A 367 40.06 -149.06
REMARK 500 3 LEU A 368 95.51 -36.80
REMARK 500 4 LEU A 363 39.55 -95.04
REMARK 500 4 ASN A 367 44.22 -151.41
REMARK 500 4 LEU A 368 94.58 -41.08
REMARK 500 5 LEU A 363 39.71 -94.73
REMARK 500 5 ASN A 367 45.48 -157.91
REMARK 500 5 LEU A 368 93.36 -46.44
REMARK 500 5 LEU A 383 107.31 -53.35
REMARK 500 6 LEU A 363 39.75 -93.95
REMARK 500 6 ASN A 367 43.94 -151.67
REMARK 500 6 LEU A 368 95.28 -42.13
REMARK 500 6 LEU A 383 106.63 -55.57
REMARK 500 6 GLN A 384 92.55 -66.08
REMARK 500 7 LEU A 363 39.86 -96.35
REMARK 500 7 ASN A 367 47.74 -159.33
REMARK 500 7 LEU A 368 90.55 -50.27
REMARK 500 8 LEU A 363 39.56 -93.86
REMARK 500 8 ASN A 367 41.69 -150.74
REMARK 500 8 LEU A 368 95.47 -41.30
REMARK 500 8 GLN A 410 -33.20 -137.76
REMARK 500 9 LEU A 363 39.85 -95.42
REMARK 500 9 ASN A 367 47.28 -152.19
REMARK 500 9 LEU A 368 93.42 -44.42
REMARK 500 10 LEU A 363 40.21 -95.66
REMARK 500 10 ASN A 367 42.97 -158.78
REMARK 500 10 LEU A 368 92.76 -47.71
REMARK 500 10 GLN A 384 73.92 -110.09
REMARK 500 11 LEU A 363 40.08 -96.71
REMARK 500 11 ASN A 367 61.76 -157.99
REMARK 500 11 LEU A 383 106.54 -55.77
REMARK 500 11 GLN A 384 82.97 -67.16
REMARK 500 12 LEU A 363 39.71 -93.44
REMARK 500 12 ASN A 367 41.86 -147.97
REMARK 500 12 LEU A 368 95.45 -34.96
REMARK 500 12 GLN A 384 86.25 -67.81
REMARK 500 13 LEU A 363 39.56 -98.23
REMARK 500 13 ASN A 367 42.77 -151.00
REMARK 500 13 LEU A 368 88.04 -53.00
REMARK 500 14 LEU A 363 39.65 -92.33
REMARK 500
REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 351 0.24 SIDE CHAIN
REMARK 500 1 ARG A 354 0.21 SIDE CHAIN
REMARK 500 1 ARG A 372 0.28 SIDE CHAIN
REMARK 500 1 ARG A 404 0.32 SIDE CHAIN
REMARK 500 1 ARG A 405 0.31 SIDE CHAIN
REMARK 500 2 ARG A 351 0.24 SIDE CHAIN
REMARK 500 2 ARG A 354 0.32 SIDE CHAIN
REMARK 500 2 ARG A 372 0.27 SIDE CHAIN
REMARK 500 2 ARG A 404 0.32 SIDE CHAIN
REMARK 500 2 ARG A 405 0.31 SIDE CHAIN
REMARK 500 3 ARG A 351 0.25 SIDE CHAIN
REMARK 500 3 ARG A 354 0.22 SIDE CHAIN
REMARK 500 3 ARG A 372 0.21 SIDE CHAIN
REMARK 500 3 ARG A 404 0.32 SIDE CHAIN
REMARK 500 3 ARG A 405 0.23 SIDE CHAIN
REMARK 500 4 ARG A 351 0.24 SIDE CHAIN
REMARK 500 4 ARG A 354 0.28 SIDE CHAIN
REMARK 500 4 ARG A 372 0.28 SIDE CHAIN
REMARK 500 4 ARG A 404 0.22 SIDE CHAIN
REMARK 500 4 ARG A 405 0.22 SIDE CHAIN
REMARK 500 5 ARG A 351 0.30 SIDE CHAIN
REMARK 500 5 ARG A 354 0.30 SIDE CHAIN
REMARK 500 5 ARG A 372 0.22 SIDE CHAIN
REMARK 500 5 ARG A 404 0.30 SIDE CHAIN
REMARK 500 5 ARG A 405 0.32 SIDE CHAIN
REMARK 500 6 ARG A 351 0.25 SIDE CHAIN
REMARK 500 6 ARG A 354 0.29 SIDE CHAIN
REMARK 500 6 ARG A 372 0.30 SIDE CHAIN
REMARK 500 6 ARG A 404 0.27 SIDE CHAIN
REMARK 500 6 ARG A 405 0.31 SIDE CHAIN
REMARK 500 7 ARG A 351 0.23 SIDE CHAIN
REMARK 500 7 ARG A 354 0.24 SIDE CHAIN
REMARK 500 7 ARG A 372 0.25 SIDE CHAIN
REMARK 500 7 ARG A 404 0.22 SIDE CHAIN
REMARK 500 7 ARG A 405 0.25 SIDE CHAIN
REMARK 500 8 ARG A 351 0.29 SIDE CHAIN
REMARK 500 8 ARG A 354 0.26 SIDE CHAIN
REMARK 500 8 ARG A 372 0.31 SIDE CHAIN
REMARK 500 8 ARG A 404 0.23 SIDE CHAIN
REMARK 500 8 ARG A 405 0.30 SIDE CHAIN
REMARK 500 9 ARG A 351 0.24 SIDE CHAIN
REMARK 500 9 ARG A 354 0.26 SIDE CHAIN
REMARK 500 9 ARG A 372 0.24 SIDE CHAIN
REMARK 500 9 ARG A 404 0.30 SIDE CHAIN
REMARK 500 9 ARG A 405 0.25 SIDE CHAIN
REMARK 500 10 ARG A 351 0.22 SIDE CHAIN
REMARK 500 10 ARG A 354 0.24 SIDE CHAIN
REMARK 500 10 ARG A 372 0.32 SIDE CHAIN
REMARK 500 10 ARG A 404 0.28 SIDE CHAIN
REMARK 500 10 ARG A 405 0.23 SIDE CHAIN
REMARK 500
REMARK 500 THIS ENTRY HAS 75 PLANE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1Z9E A 347 471 UNP O75475 O75475_HUMAN 347 471
SEQADV 1Z9E GLY A 345 UNP O75475 CLONING ARTIFACT
SEQADV 1Z9E SER A 346 UNP O75475 CLONING ARTIFACT
SEQRES 1 A 127 GLY SER SER MET ASP SER ARG LEU GLN ARG ILE HIS ALA
SEQRES 2 A 127 GLU ILE LYS ASN SER LEU LYS ILE ASP ASN LEU ASP VAL
SEQRES 3 A 127 ASN ARG CYS ILE GLU ALA LEU ASP GLU LEU ALA SER LEU
SEQRES 4 A 127 GLN VAL THR MET GLN GLN ALA GLN LYS HIS THR GLU MET
SEQRES 5 A 127 ILE THR THR LEU LYS LYS ILE ARG ARG PHE LYS VAL SER
SEQRES 6 A 127 GLN VAL ILE MET GLU LYS SER THR MET LEU TYR ASN LYS
SEQRES 7 A 127 PHE LYS ASN MET PHE LEU VAL GLY GLU GLY ASP SER VAL
SEQRES 8 A 127 ILE THR GLN VAL LEU ASN LYS SER LEU ALA GLU GLN ARG
SEQRES 9 A 127 GLN HIS GLU GLU ALA ASN LYS THR LYS ASP GLN GLY LYS
SEQRES 10 A 127 LYS GLY PRO ASN LYS LYS LEU GLU LYS GLU
HELIX 1 1 SER A 347 LEU A 363 1 17
HELIX 2 2 LYS A 364 LEU A 368 5 5
HELIX 3 3 ASP A 369 LEU A 383 1 15
HELIX 4 4 THR A 386 GLN A 391 1 6
HELIX 5 5 HIS A 393 ARG A 404 1 12
HELIX 6 6 VAL A 411 VAL A 429 1 19
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes