Header list of 1z8s.pdb file
Complete list - t 20 2 Bytes
HEADER TRANSFERASE 31-MAR-05 1Z8S
TITLE DNAB BINDING DOMAIN OF DNAG (P16) FROM BACILLUS STEAROTHERMOPHILUS
TITLE 2 (RESIDUES 452-597)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA PRIMASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: P16, RESIDUES 451-597;
COMPND 5 EC: 2.7.7.-;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS;
SOURCE 3 ORGANISM_TAXID: 1422;
SOURCE 4 GENE: DNAG;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21D
KEYWDS TWO ALPHA HELICAL SUB-DOMAINS, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR K.SYSON,J.THIRLWAY,A.M.HOUNSLOW,P.SOULTANAS,J.P.WALTHO
REVDAT 3 20-OCT-21 1Z8S 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1Z8S 1 VERSN
REVDAT 1 04-OCT-05 1Z8S 0
JRNL AUTH K.SYSON,J.THIRLWAY,A.M.HOUNSLOW,P.SOULTANAS,J.P.WALTHO
JRNL TITL SOLUTION STRUCTURE OF THE HELICASE-INTERACTION DOMAIN OF THE
JRNL TITL 2 PRIMASE DNAG: A MODEL FOR HELICASE ACTIVATION
JRNL REF STRUCTURE V. 13 609 2005
JRNL REFN ISSN 0969-2126
JRNL PMID 15837199
JRNL DOI 10.1016/J.STR.2005.01.0220.1016
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CNS 1.1
REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER, ET AL. (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: TOTAL OF 1707 EXPERIMENTALLY DETERMINED
REMARK 3 RESTRAINTS, 1439 NOE-DERIVED DISTANCE CONSTRAINTS, 200 DIHEDRAL
REMARK 3 ANGLE RESTRAINTS, 68 HYDROGEN BOND DISTANCE RESTRAINTS
REMARK 4
REMARK 4 1Z8S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-05.
REMARK 100 THE DEPOSITION ID IS D_1000032441.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298
REMARK 210 PH : 6.8; 6.8; 6.8
REMARK 210 IONIC STRENGTH : 20MM POTASSIUM PHOSPHATE, 200MM
REMARK 210 SODIUM CHLORIDE; 20MM POTASSIUM
REMARK 210 PHOSPHATE, 200MM SODIUM CHLORIDE;
REMARK 210 20MM POTASSIUM PHOSPHATE, 200MM
REMARK 210 SODIUM CHLORIDE
REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM U-15N P16; 1MM U-15N U13C
REMARK 210 P16; 0.5MM U-15N P16
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : SIMULTANEOUSLY ACQUIRED 15N- AND
REMARK 210 13C-EDITED 3D NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : FELIX 2000, CNS 1.1
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS FOLLOWED
REMARK 210 BY CARTESIAN SLOW-COOL ANNEALING
REMARK 210 ENERGY MINIMISATION
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LYS A 454 46.14 -105.34
REMARK 500 1 LEU A 456 -75.95 -61.13
REMARK 500 1 LEU A 457 79.62 -163.68
REMARK 500 1 ALA A 459 146.87 -177.88
REMARK 500 1 PHE A 460 48.36 -92.70
REMARK 500 1 ARG A 473 -62.39 -91.15
REMARK 500 1 ILE A 485 -51.28 -143.71
REMARK 500 1 ARG A 488 102.16 -175.80
REMARK 500 1 ASN A 490 47.44 -89.58
REMARK 500 1 GLU A 507 -71.04 -66.53
REMARK 500 1 GLU A 510 118.55 -166.60
REMARK 500 1 ALA A 511 73.04 -65.98
REMARK 500 1 SER A 518 45.07 -101.65
REMARK 500 1 LEU A 533 44.21 -175.06
REMARK 500 1 LEU A 535 58.32 -141.98
REMARK 500 1 VAL A 540 -12.90 74.13
REMARK 500 1 SER A 541 90.32 64.92
REMARK 500 1 PRO A 556 62.09 -67.37
REMARK 500 1 LYS A 575 170.49 72.55
REMARK 500 1 PHE A 577 -79.42 -110.16
REMARK 500 2 LEU A 456 -176.72 62.19
REMARK 500 2 LEU A 457 -52.86 -172.37
REMARK 500 2 PRO A 458 -152.83 -76.61
REMARK 500 2 PHE A 460 -82.17 -124.14
REMARK 500 2 MET A 472 -7.59 -49.46
REMARK 500 2 PHE A 489 -165.81 -62.55
REMARK 500 2 ASN A 490 -68.66 69.41
REMARK 500 2 HIS A 509 34.36 -169.61
REMARK 500 2 GLU A 510 156.52 60.75
REMARK 500 2 ARG A 519 -38.62 -140.98
REMARK 500 2 LEU A 533 49.24 -158.37
REMARK 500 2 LEU A 535 64.83 -153.48
REMARK 500 2 VAL A 540 159.71 68.07
REMARK 500 2 ASN A 554 -166.90 167.60
REMARK 500 2 PRO A 556 159.35 -39.74
REMARK 500 2 LYS A 575 169.72 75.94
REMARK 500 2 PHE A 577 -46.47 178.74
REMARK 500 2 THR A 579 145.20 -178.11
REMARK 500 2 SER A 595 -168.87 51.36
REMARK 500 3 PRO A 458 -170.24 -57.67
REMARK 500 3 ALA A 459 -75.80 -88.05
REMARK 500 3 PHE A 460 44.65 -97.80
REMARK 500 3 MET A 472 -6.26 -58.14
REMARK 500 3 ARG A 473 -69.33 -134.12
REMARK 500 3 ARG A 488 -66.93 -136.53
REMARK 500 3 PHE A 489 -89.41 -162.93
REMARK 500 3 ASN A 490 -163.09 43.45
REMARK 500 3 HIS A 509 12.58 -143.11
REMARK 500 3 ALA A 511 -58.24 69.44
REMARK 500 3 ASP A 512 90.28 65.38
REMARK 500
REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 ACCORDING TO AUTHORS, RESIDUE 530 IN THE ACTUAL SEQUENCE
REMARK 999 IS A GLU AND 531 IS A LEU. THE INITIAL SEQUENCE
REMARK 999 SUBMITTED IN THE DATABASE FOR THESE RESIDUES IS INCORRECT.
DBREF 1Z8S A 452 597 UNP Q9X4D0 PRIM_BACST 451 597
SEQADV 1Z8S MET A 452 UNP Q9X4D0 LEU 452 ENGINEERED MUTATION
SEQADV 1Z8S GLU A 530 UNP Q9X4D0 ASP 530 SEE REMARK 999
SEQADV 1Z8S LEU A 531 UNP Q9X4D0 VAL 531 SEE REMARK 999
SEQRES 1 A 146 MET ALA LYS LYS LEU LEU PRO ALA PHE GLN ASN ALA GLU
SEQRES 2 A 146 ARG LEU LEU LEU ALA HIS MET MET ARG SER ARG ASP VAL
SEQRES 3 A 146 ALA LEU VAL VAL GLN GLU ARG ILE GLY GLY ARG PHE ASN
SEQRES 4 A 146 ILE GLU GLU HIS ARG ALA LEU ALA ALA TYR ILE TYR ALA
SEQRES 5 A 146 PHE TYR GLU GLU GLY HIS GLU ALA ASP PRO GLY ALA LEU
SEQRES 6 A 146 ILE SER ARG ILE PRO GLY GLU LEU GLN PRO LEU ALA SER
SEQRES 7 A 146 GLU LEU SER LEU LEU LEU ILE ALA ASP ASP VAL SER GLU
SEQRES 8 A 146 GLN GLU LEU GLU ASP TYR ILE ARG HIS VAL LEU ASN ARG
SEQRES 9 A 146 PRO LYS TRP LEU MET LEU LYS VAL LYS GLU GLN GLU LYS
SEQRES 10 A 146 THR GLU ALA GLU ARG ARG LYS ASP PHE LEU THR ALA ALA
SEQRES 11 A 146 ARG ILE ALA LYS GLU MET ILE GLU MET LYS LYS MET LEU
SEQRES 12 A 146 SER SER SER
HELIX 1 1 PHE A 460 MET A 472 1 13
HELIX 2 2 SER A 474 ILE A 485 1 12
HELIX 3 3 ILE A 491 GLY A 508 1 18
HELIX 4 4 ASP A 512 ILE A 517 1 6
HELIX 5 5 SER A 518 ILE A 520 5 3
HELIX 6 6 GLU A 523 SER A 532 1 10
HELIX 7 7 SER A 541 ASN A 554 1 14
HELIX 8 8 LYS A 557 ARG A 574 1 18
HELIX 9 9 ALA A 580 SER A 595 1 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - t 20 2 Bytes