Header list of 1z86.pdb file
Complete list - r 2 2 Bytes
HEADER PROTEIN BINDING 30-MAR-05 1Z86
TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF ALPHA-SYNTROPHIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ALPHA-1-SYNTROPHIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: PDZ DOMAIN;
COMPND 5 SYNONYM: ALPHA-SYNTROPHIN, 59 KDA DYSTROPHIN-ASSOCIATED PROTEIN A1,
COMPND 6 ACIDIC COMPONENT 1, SYNTROPHIN 1;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32A(MODIFIED VERSION)
KEYWDS TWO ALPHA HELIX, SIX BETA STRANDS, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.YAN,W.XU,W.WEN,J.F.LONG,M.E.ADAMS,S.C.FROEHNER,M.ZHANG
REVDAT 3 02-MAR-22 1Z86 1 REMARK
REVDAT 2 24-FEB-09 1Z86 1 VERSN
REVDAT 1 24-JAN-06 1Z86 0
JRNL AUTH J.YAN,W.WEN,W.XU,J.F.LONG,M.E.ADAMS,S.C.FROEHNER,M.ZHANG
JRNL TITL STRUCTURE OF THE SPLIT PH DOMAIN AND DISTINCT LIPID-BINDING
JRNL TITL 2 PROPERTIES OF THE PH-PDZ SUPRAMODULE OF ALPHA-SYNTROPHIN
JRNL REF EMBO J. V. 24 3985 2005
JRNL REFN ISSN 0261-4189
JRNL PMID 16252003
JRNL DOI 10.1038/SJ.EMBOJ.7600858
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.1
REMARK 3 AUTHORS : BRUGER, A.T.
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1Z86 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-05.
REMARK 100 THE DEPOSITION ID IS D_1000032419.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM PDZ DOMAIN OF ALPHA1
REMARK 210 -SYNTROPHIN U-15N, 13C; 100MM
REMARK 210 POTASSIUM PHOSPHATE; 90% H2O,10%
REMARK 210 D2O; 1MM PDZ DOMAIN OF ALPHA1-
REMARK 210 SYNTROPHIN U-15N; 100MM
REMARK 210 POTASSIUM PHOSPHATE; 90% H2O,10%
REMARK 210 D2O; 1MM PDZ DOMAIN OF ALPHA1-
REMARK 210 SYNTROPHIN U-15N, 13C; 100MM
REMARK 210 POTASSIUM PHOSPHATE; 99.9% D2O;
REMARK 210 1MM PDZ DOMAIN OF ALPHA1-
REMARK 210 SYNTROPHIN; 100MM POTASSIUM
REMARK 210 PHOSPHATE; 99.9% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCO,HNCA, HN(CO)CA, HNCACB,
REMARK 210 CBCA(CO)NH; 3D_15N-SEPARATED_
REMARK 210 NOESY; 3D_13C-SEPARATED_NOESY;
REMARK 210 2D NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O SER A 95 H SER A 109 1.58
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ALA A 87 -76.88 -137.75
REMARK 500 1 ALA A 89 -64.33 -175.72
REMARK 500 1 LYS A 110 89.74 -172.43
REMARK 500 1 ALA A 122 61.76 -154.95
REMARK 500 1 LEU A 123 97.64 -173.21
REMARK 500 1 SER A 139 59.59 -140.98
REMARK 500 1 THR A 141 160.53 -37.63
REMARK 500 1 LYS A 151 58.16 -102.64
REMARK 500 1 LYS A 154 -138.84 60.29
REMARK 500 2 LEU A 92 -178.04 61.02
REMARK 500 2 LYS A 103 30.46 70.03
REMARK 500 2 LYS A 110 89.86 -171.17
REMARK 500 2 ILE A 129 88.61 -69.98
REMARK 500 2 THR A 141 163.15 -39.73
REMARK 500 2 GLU A 155 144.75 -170.34
REMARK 500 2 LYS A 164 -78.37 65.35
REMARK 500 3 LEU A 92 -75.77 -79.75
REMARK 500 3 LYS A 110 88.28 -165.87
REMARK 500 3 GLU A 121 29.64 46.84
REMARK 500 3 LEU A 123 105.42 -172.17
REMARK 500 3 THR A 141 161.91 -39.44
REMARK 500 3 LYS A 164 -168.59 45.81
REMARK 500 4 ASP A 88 73.56 -161.99
REMARK 500 4 ALA A 89 94.30 59.86
REMARK 500 4 LEU A 92 -172.74 60.84
REMARK 500 4 SER A 109 -12.26 -140.37
REMARK 500 4 LYS A 110 94.07 -176.05
REMARK 500 4 LEU A 123 70.38 -174.36
REMARK 500 4 THR A 141 161.19 -38.58
REMARK 500 4 LYS A 151 79.99 -119.33
REMARK 500 4 LYS A 154 -135.89 60.98
REMARK 500 4 LYS A 164 -81.31 61.34
REMARK 500 5 ALA A 87 -75.67 -86.25
REMARK 500 5 ASP A 88 -56.15 -176.77
REMARK 500 5 LYS A 110 91.34 -173.47
REMARK 500 5 ALA A 122 59.52 -148.43
REMARK 500 5 LEU A 123 98.43 -178.08
REMARK 500 5 THR A 141 163.02 -39.87
REMARK 500 5 LYS A 154 -7.33 77.74
REMARK 500 5 GLU A 155 111.23 -170.45
REMARK 500 5 TYR A 162 85.05 -69.87
REMARK 500 5 LYS A 164 75.39 40.52
REMARK 500 6 LYS A 110 94.02 -175.79
REMARK 500 6 LEU A 123 91.44 -176.58
REMARK 500 6 SER A 139 59.32 -140.31
REMARK 500 6 THR A 141 161.36 -38.66
REMARK 500 6 GLU A 155 117.44 -170.08
REMARK 500 6 LYS A 164 163.20 61.33
REMARK 500 7 LYS A 86 -164.21 -58.18
REMARK 500 7 LYS A 110 90.89 -173.84
REMARK 500
REMARK 500 THIS ENTRY HAS 158 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1Z87 RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF THE SPLIT PH-PDZ SUPRAMODULE OF ALPHA-
REMARK 900 SYNTROPHIN
DBREF 1Z86 A 79 165 UNP Q61234 SNTA1_MOUSE 79 165
SEQRES 1 A 87 ARG ARG ARG VAL THR VAL ARG LYS ALA ASP ALA GLY GLY
SEQRES 2 A 87 LEU GLY ILE SER ILE LYS GLY GLY ARG GLU ASN LYS MET
SEQRES 3 A 87 PRO ILE LEU ILE SER LYS ILE PHE LYS GLY LEU ALA ALA
SEQRES 4 A 87 ASP GLN THR GLU ALA LEU PHE VAL GLY ASP ALA ILE LEU
SEQRES 5 A 87 SER VAL ASN GLY GLU ASP LEU SER SER ALA THR HIS ASP
SEQRES 6 A 87 GLU ALA VAL GLN ALA LEU LYS LYS THR GLY LYS GLU VAL
SEQRES 7 A 87 VAL LEU GLU VAL LYS TYR MET LYS GLU
HELIX 1 1 ARG A 100 LYS A 103 5 4
HELIX 2 2 LEU A 115 GLU A 121 1 7
HELIX 3 3 SER A 138 ALA A 140 5 3
HELIX 4 4 THR A 141 LYS A 151 1 11
SHEET 1 A 5 ARG A 80 VAL A 84 0
SHEET 2 A 5 VAL A 156 TYR A 162 -1 O LEU A 158 N VAL A 82
SHEET 3 A 5 ASP A 127 VAL A 132 -1 N ALA A 128 O LYS A 161
SHEET 4 A 5 MET A 104 ILE A 111 -1 N ILE A 108 O ASP A 127
SHEET 5 A 5 ILE A 94 GLY A 99 -1 N SER A 95 O SER A 109
SHEET 1 B 4 ARG A 80 VAL A 84 0
SHEET 2 B 4 VAL A 156 TYR A 162 -1 O LEU A 158 N VAL A 82
SHEET 3 B 4 ASP A 127 VAL A 132 -1 N ALA A 128 O LYS A 161
SHEET 4 B 4 GLU A 135 ASP A 136 -1 O GLU A 135 N VAL A 132
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes