Header list of 1z2j.pdb file
Complete list - r 2 2 Bytes
HEADER RNA 08-MAR-05 1Z2J
TITLE SOLUTION STRUCTURE OF THE HIV-1 FRAMESHIFT INDUCING ELEMENT
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HIV-1 FRAMESHIFT SITE RNA;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: RNA WAS PRODUCED FROM IN VITRO TRANSCRIPTON WITH T7
SOURCE 4 RNA PLOYMERASE FROM DNA TEMPLATES.
KEYWDS STEM-LOOP, PURINE BULGE, TETRALOOP, RNA
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR D.W.STAPLE,S.E.BUTCHER
REVDAT 3 02-MAR-22 1Z2J 1 REMARK
REVDAT 2 24-FEB-09 1Z2J 1 VERSN
REVDAT 1 14-JUN-05 1Z2J 0
JRNL AUTH D.W.STAPLE,S.E.BUTCHER
JRNL TITL SOLUTION STRUCTURE AND THERMODYNAMIC INVESTIGATION OF THE
JRNL TITL 2 HIV-1 FRAMESHIFT INDUCING ELEMENT.
JRNL REF J.MOL.BIOL. V. 349 1011 2005
JRNL REFN ISSN 0022-2836
JRNL PMID 15927637
JRNL DOI 10.1016/J.JMB.2005.03.038
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XPLOR-NIH
REMARK 3 AUTHORS : SCHWIETERS
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1Z2J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-05.
REMARK 100 THE DEPOSITION ID IS D_1000032216.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303; 283
REMARK 210 PH : 6.8; 6.8
REMARK 210 IONIC STRENGTH : 50 MM NACL; 50 MM NACL
REMARK 210 PRESSURE : 1 ATM; 1 ATM
REMARK 210 SAMPLE CONTENTS : ALL NMR SAMPLES WERE 1 MM RNA,
REMARK 210 AND APPROXIMATELY 50 MM NACL,
REMARK 210 100% D2O; ALL NMR SAMPLES WERE 1
REMARK 210 MM RNA, AND APPROXIMATELY 50 MM
REMARK 210 NACL, 90% H2O/10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_13C
REMARK 210 -SEPARATED_NOESY; HNN-COSY; HCCH-
REMARK 210 TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ; 900
REMARK 210 MHZ
REMARK 210 SPECTROMETER MODEL : DMX; INOVA
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR, NMRPIPE, SPARKY, CNS
REMARK 210 METHOD USED : NULL
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HO2' A A 22 O4' A A 23 1.39
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 10 A A 33 C4' A A 33 C3' -0.064
REMARK 500 11 A A 33 C4' A A 33 C3' -0.062
REMARK 500 20 A A 33 C4' A A 33 C3' -0.071
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES
REMARK 500 2 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.5 DEGREES
REMARK 500 3 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES
REMARK 500 3 A A 28 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES
REMARK 500 4 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.9 DEGREES
REMARK 500 5 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES
REMARK 500 5 A A 28 C1' - O4' - C4' ANGL. DEV. = -4.2 DEGREES
REMARK 500 5 C A 31 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES
REMARK 500 6 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES
REMARK 500 7 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.8 DEGREES
REMARK 500 7 C A 31 C1' - O4' - C4' ANGL. DEV. = -4.2 DEGREES
REMARK 500 8 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.4 DEGREES
REMARK 500 8 A A 28 C1' - O4' - C4' ANGL. DEV. = -4.2 DEGREES
REMARK 500 9 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES
REMARK 500 9 A A 28 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES
REMARK 500 9 C A 31 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES
REMARK 500 10 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES
REMARK 500 11 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.7 DEGREES
REMARK 500 12 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES
REMARK 500 12 A A 28 C1' - O4' - C4' ANGL. DEV. = -4.2 DEGREES
REMARK 500 13 A A 28 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES
REMARK 500 14 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.9 DEGREES
REMARK 500 15 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES
REMARK 500 16 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.4 DEGREES
REMARK 500 17 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.7 DEGREES
REMARK 500 17 A A 28 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES
REMARK 500 18 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.5 DEGREES
REMARK 500 18 A A 28 C1' - O4' - C4' ANGL. DEV. = -4.5 DEGREES
REMARK 500 19 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.8 DEGREES
REMARK 500 20 G A 11 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES
REMARK 500 20 A A 22 C1' - O4' - C4' ANGL. DEV. = -5.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1PJY RELATED DB: PDB
REMARK 900 HIV-1 FRAMESHIFT SITE STEM-LOOP
DBREF 1Z2J A 1 45 PDB 1Z2J 1Z2J 1 45
SEQRES 1 A 45 G G G A A G A U C U G G C
SEQRES 2 A 45 C U U C C C A C A A G G G
SEQRES 3 A 45 A A G G C C A G G G A A U
SEQRES 4 A 45 C U U C C C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes