Header list of 1z1z.pdb file
Complete list - 2 20 Bytes
HEADER VIRAL PROTEIN 07-MAR-05 1Z1Z
TITLE NMR STRUCTURE OF THE GPU TAIL PROTEIN FROM LAMBDA BACTERIOPHAGE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MINOR TAIL PROTEIN U;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA;
SOURCE 3 ORGANISM_TAXID: 10710;
SOURCE 4 GENE: GPU;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B;
SOURCE 10 OTHER_DETAILS: THE FULL GPU GENE WAS INSERTED INTO THE NDEI AND
SOURCE 11 BAMHI SITES OF PET15B RESULTING IN AN AMINO TERMINALLY HEXAHISTIDINE
SOURCE 12 TAGGED FUSION PROTEIN WITH AN INTERVENING THROMBIN PROTEASE CLEAVAGE
SOURCE 13 SITE
KEYWDS MIXED ALPHA-BETA, TAIL PROTEIN, BACTERIOPHAGE, VIRAL PROTEIN
EXPDTA SOLUTION NMR
AUTHOR L.EDMONDS,K.MAXWELL,A.DAVIDSON,L.W.DONALDSON
REVDAT 4 02-MAR-22 1Z1Z 1 REMARK
REVDAT 3 24-FEB-09 1Z1Z 1 VERSN
REVDAT 2 08-JUL-08 1Z1Z 1 JRNL
REVDAT 1 18-APR-06 1Z1Z 0
JRNL AUTH L.EDMONDS,A.LIU,J.J.KWAN,A.AVANESSY,M.CARACOGLIA,I.YANG,
JRNL AUTH 2 K.L.MAXWELL,J.RUBENSTEIN,A.R.DAVIDSON,L.W.DONALDSON
JRNL TITL THE NMR STRUCTURE OF THE GPU TAIL-TERMINATOR PROTEIN FROM
JRNL TITL 2 BACTERIOPHAGE LAMBDA: IDENTIFICATION OF SITES CONTRIBUTING
JRNL TITL 3 TO MG(II)-MEDIATED OLIGOMERIZATION AND BIOLOGICAL FUNCTION.
JRNL REF J.MOL.BIOL. V. 365 175 2007
JRNL REFN ISSN 0022-2836
JRNL PMID 17056065
JRNL DOI 10.1016/J.JMB.2006.09.068
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH L.EDMONDS,R.T.THIRUMOORTHY,A.LIU,A.DAVIDSON,L.W.DONALDSON
REMARK 1 TITL NMR ASSIGNMENT OF THE GPU TAIL PROTEIN FROM LAMBDA
REMARK 1 TITL 2 BACTERIOPHAGE
REMARK 1 REF TO BE PUBLISHED
REMARK 1 REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : NMRPIPE, XPLOR-NIH 2.9.9
REMARK 3 AUTHORS : DELAGLIO (NMRPIPE),
REMARK 3 C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE
REMARK 3 (XPLOR-NIH)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: 1180 NOE DISTANCE RESTRAINTS (876
REMARK 3 INTRAMOLECULAR, 505 SHORT-RANGE, 128 MEDIUM RANGE, 371 LONG-
REMARK 3 RANGE), 42 PAIRS OF HYDROGEN BOND DISTANCE RESTRAINTS, 106 PAIRS
REMARK 3 OF PHI/PSI DIHEDRAL ANGLE RESTRAINTS AND 41 AMIDE RESIDUAL
REMARK 3 DIPOLAR COUPLING RESTRAINTS WERE INCORPORATED INTO THE STRUCTURE
REMARK 3 CALCULATION. NOE CALIBRATION WAS PERFORMED WITH CANDID MODULE OF
REMARK 3 CYANA. INITIALLY, 200 STRUCTURES WERE CALCUATED WITH XPLOR-NIH.
REMARK 3 FROM THIS ENSEMBLE, 50 LOW-ENERGY STRUCTURE WERE REFINED IN
REMARK 3 WATER USING THE XPLOR-NIH PROTOCOL BY C. SPRONK. THE TOP 20
REMARK 3 STRUCTURES BY ENERGY HAD A BACKBONE RMSD OF 0.96 +/- 0.16 A ON
REMARK 3 THE SECONDARY STRUCTURE ELEMENTS. IN ADDITION TO RESIDUES 1-3
REMARK 3 AND 128-131 AT THE TERMINI, A LARGE LOOP SPANNING RESIDUES 45-60
REMARK 3 IS DISORDERED.
REMARK 4
REMARK 4 1Z1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-05.
REMARK 100 THE DEPOSITION ID IS D_1000032196.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293
REMARK 210 PH : 7.8
REMARK 210 IONIC STRENGTH : 50 MM KCL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 0.9 MM GPU, U-15N,13C, 10 MM
REMARK 210 TRIS-D11, PH 7.8, 50 MM
REMARK 210 POTASSIUM CHLORIDE, 0.02% SODIUM
REMARK 210 AZIDE, 10% D2O, 90% H2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; 3D_13C-
REMARK 210 SEPARATED-AROMATIC_NOESY; 2D-
REMARK 210 IPAP-15N_HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRVIEW 5.2, CYANA 2.1.3
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D
REMARK 210 HETERONUCLEAR TECHNIQUES
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 MET A 131
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 29 38.07 -94.94
REMARK 500 VAL A 30 -169.02 -106.56
REMARK 500 GLU A 51 97.51 48.83
REMARK 500 ASP A 112 18.65 -145.58
REMARK 500 ASP A 114 -74.00 -97.23
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1IN0 RELATED DB: PDB
REMARK 900 HOMOLOGOUS TERTIARY STRUCTURE
DBREF 1Z1Z A 1 131 UNP P03732 VMTU_LAMBD 1 131
SEQRES 1 A 131 MET LYS HIS THR GLU LEU ARG ALA ALA VAL LEU ASP ALA
SEQRES 2 A 131 LEU GLU LYS HIS ASP THR GLY ALA THR PHE PHE ASP GLY
SEQRES 3 A 131 ARG PRO ALA VAL PHE ASP GLU ALA ASP PHE PRO ALA VAL
SEQRES 4 A 131 ALA VAL TYR LEU THR GLY ALA GLU TYR THR GLY GLU GLU
SEQRES 5 A 131 LEU ASP SER ASP THR TRP GLN ALA GLU LEU HIS ILE GLU
SEQRES 6 A 131 VAL PHE LEU PRO ALA GLN VAL PRO ASP SER GLU LEU ASP
SEQRES 7 A 131 ALA TRP MET GLU SER ARG ILE TYR PRO VAL MET SER ASP
SEQRES 8 A 131 ILE PRO ALA LEU SER ASP LEU ILE THR SER MET VAL ALA
SEQRES 9 A 131 SER GLY TYR ASP TYR ARG ARG ASP ASP ASP ALA GLY LEU
SEQRES 10 A 131 TRP SER SER ALA ASP LEU THR TYR VAL ILE THR TYR GLU
SEQRES 11 A 131 MET
HELIX 1 1 THR A 4 ASP A 18 1 15
HELIX 2 2 ASP A 32 PHE A 36 5 5
HELIX 3 3 PRO A 73 ILE A 92 1 20
HELIX 4 4 ILE A 92 ILE A 99 1 8
SHEET 1 A 5 PHE A 23 PHE A 24 0
SHEET 2 A 5 ALA A 38 LEU A 43 1 O VAL A 41 N PHE A 24
SHEET 3 A 5 GLU A 61 LEU A 68 -1 O PHE A 67 N ALA A 38
SHEET 4 A 5 SER A 119 VAL A 126 -1 O SER A 119 N LEU A 68
SHEET 5 A 5 TYR A 107 ARG A 110 -1 N ASP A 108 O ASP A 122
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 2 20 Bytes