Header list of 1z09.pdb file
Complete list - r 2 2 Bytes
HEADER TRANSPORT PROTEIN 01-MAR-05 1Z09
TITLE SOLUTION STRUCTURE OF KM23
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 2A, CYTOPLASMIC;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: LC7 DYNEIN LIGHT CHAIN KM23;
COMPND 5 SYNONYM: DYNEIN-ASSOCIATED PROTEIN KM23, BITHORAXOID-LIKE PROTEIN,
COMPND 6 BLP, HSPC162;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: DNCL2A, BITH, DNLC2A;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS HOMODIMER, PROTEIN-PROTEIN COMPLEX, KM23, LC7, DYNEIN LIGHT CHAIN,
KEYWDS 2 TRANSPORT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR U.ILANGOVAN,W.DING,K.MULDER,A.P.HINCK,J.ZUNIGA,J.A.TRBOVICH,
AUTHOR 2 B.DEMELER,J.C.GROPPE
REVDAT 4 02-MAR-22 1Z09 1 REMARK
REVDAT 3 24-FEB-09 1Z09 1 VERSN
REVDAT 2 06-SEP-05 1Z09 1 JRNL
REVDAT 1 02-AUG-05 1Z09 0
JRNL AUTH U.ILANGOVAN,W.DING,Y.ZHONG,C.L.WILSON,J.C.GROPPE,
JRNL AUTH 2 J.T.TRBOVICH,J.ZUNIGA,B.DEMELER,Q.TANG,G.GAO,K.M.MULDER,
JRNL AUTH 3 A.P.HINCK
JRNL TITL STRUCTURE AND DYNAMICS OF THE HOMODIMERIC DYNEIN LIGHT CHAIN
JRNL TITL 2 KM23.
JRNL REF J.MOL.BIOL. V. (2) 338 2005
JRNL REFN ISSN 0022-2836
JRNL PMID 16083906
JRNL DOI 10.1016/J.JMB.2005.07.002
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, XPLOR-NIH 1.0.6
REMARK 3 AUTHORS : BRUKER (XWINNMR), CLORE, M. (XPLOR-NIH)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1Z09 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-05.
REMARK 100 THE DEPOSITION ID IS D_1000032134.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 315
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 0 M NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1 MM 15N_KM23; 25 MM SODIUM
REMARK 210 ACETATE; PH 6.0; 95 % H2O; 5 %
REMARK 210 D2O; 1 MM 13C,15N_KM23; 25 MM
REMARK 210 SODIUM ACETATE; PH 6.0; 95 % H2O;
REMARK 210 5 % D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY; HNHA
REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 2.2, NMRVIEW 5.0.4
REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED
REMARK 210 ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 10
REMARK 210
REMARK 210 REMARK: FILTERED EXPERIMENTS WERE USED TO GET INTERMOLECULAR NOES
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O ALA B 149 H VAL B 153 1.53
REMARK 500 O ALA A 53 H VAL A 57 1.54
REMARK 500 O LYS B 148 H THR B 152 1.55
REMARK 500 O LYS A 52 H THR A 56 1.55
REMARK 500 O TYR A 42 H MET A 46 1.56
REMARK 500 O TYR B 138 H MET B 142 1.56
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 13 -72.87 69.62
REMARK 500 1 GLN A 14 -34.58 -173.05
REMARK 500 1 LYS A 15 -19.74 174.14
REMARK 500 1 VAL A 17 93.82 18.25
REMARK 500 1 SER A 32 145.16 -172.23
REMARK 500 1 ASN A 36 -59.83 170.86
REMARK 500 1 ASP A 83 -148.69 -91.36
REMARK 500 1 LYS A 84 -100.03 -68.02
REMARK 500 1 SER B 109 -72.87 69.65
REMARK 500 1 GLN B 110 -34.70 -173.07
REMARK 500 1 LYS B 111 -19.58 174.20
REMARK 500 1 VAL B 113 93.96 18.23
REMARK 500 1 SER B 128 145.23 -172.17
REMARK 500 1 ASN B 132 -59.90 170.86
REMARK 500 1 ASP B 179 -148.69 -91.39
REMARK 500 1 LYS B 180 -99.91 -67.98
REMARK 500 2 SER A 13 98.25 44.47
REMARK 500 2 LYS A 15 -100.57 -49.26
REMARK 500 2 SER A 32 138.27 -171.00
REMARK 500 2 ASP A 35 137.22 89.85
REMARK 500 2 PHE A 68 147.02 -174.86
REMARK 500 2 ASN A 76 -176.41 -175.89
REMARK 500 2 ALA A 81 78.46 -158.79
REMARK 500 2 LYS A 84 -58.84 77.58
REMARK 500 2 ASP A 85 -45.92 -152.15
REMARK 500 2 ASN A 93 -175.81 -177.86
REMARK 500 2 PRO A 94 -162.94 -77.61
REMARK 500 2 THR A 95 -57.46 -155.84
REMARK 500 2 SER B 109 98.28 44.48
REMARK 500 2 LYS B 111 -100.52 -49.21
REMARK 500 2 SER B 128 138.30 -171.01
REMARK 500 2 ASP B 131 137.31 89.84
REMARK 500 2 PHE B 164 147.15 -174.82
REMARK 500 2 ASN B 172 -176.55 -175.94
REMARK 500 2 ALA B 177 78.45 -158.77
REMARK 500 2 LYS B 180 -58.87 77.69
REMARK 500 2 ASP B 181 -45.97 -152.13
REMARK 500 2 ASN B 189 -175.77 -177.76
REMARK 500 2 PRO B 190 -162.90 -77.64
REMARK 500 2 THR B 191 -57.50 -155.90
REMARK 500 3 SER A 13 -69.30 62.68
REMARK 500 3 GLN A 14 -4.84 76.10
REMARK 500 3 ILE A 30 -94.71 -121.15
REMARK 500 3 SER A 32 149.43 -173.07
REMARK 500 3 ASN A 36 -57.11 174.32
REMARK 500 3 ILE A 60 -75.65 -75.95
REMARK 500 3 LYS A 84 -95.41 33.44
REMARK 500 3 SER B 109 -69.35 62.75
REMARK 500 3 GLN B 110 -4.81 76.11
REMARK 500 3 ILE B 126 -94.68 -121.29
REMARK 500
REMARK 500 THIS ENTRY HAS 216 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 10 0.32 SIDE CHAIN
REMARK 500 1 ARG A 54 0.17 SIDE CHAIN
REMARK 500 1 ARG A 58 0.32 SIDE CHAIN
REMARK 500 1 ARG A 70 0.27 SIDE CHAIN
REMARK 500 1 ARG A 72 0.32 SIDE CHAIN
REMARK 500 1 ARG B 106 0.32 SIDE CHAIN
REMARK 500 1 ARG B 150 0.17 SIDE CHAIN
REMARK 500 1 ARG B 154 0.32 SIDE CHAIN
REMARK 500 1 ARG B 166 0.27 SIDE CHAIN
REMARK 500 1 ARG B 168 0.32 SIDE CHAIN
REMARK 500 2 ARG A 10 0.28 SIDE CHAIN
REMARK 500 2 ARG A 54 0.10 SIDE CHAIN
REMARK 500 2 ARG A 58 0.29 SIDE CHAIN
REMARK 500 2 ARG A 70 0.32 SIDE CHAIN
REMARK 500 2 ARG A 72 0.31 SIDE CHAIN
REMARK 500 2 ARG B 106 0.28 SIDE CHAIN
REMARK 500 2 ARG B 150 0.10 SIDE CHAIN
REMARK 500 2 ARG B 154 0.29 SIDE CHAIN
REMARK 500 2 ARG B 166 0.32 SIDE CHAIN
REMARK 500 2 ARG B 168 0.31 SIDE CHAIN
REMARK 500 3 ARG A 10 0.32 SIDE CHAIN
REMARK 500 3 ARG A 54 0.23 SIDE CHAIN
REMARK 500 3 ARG A 58 0.31 SIDE CHAIN
REMARK 500 3 ARG A 70 0.27 SIDE CHAIN
REMARK 500 3 ARG A 72 0.31 SIDE CHAIN
REMARK 500 3 ARG B 106 0.32 SIDE CHAIN
REMARK 500 3 ARG B 150 0.23 SIDE CHAIN
REMARK 500 3 ARG B 154 0.31 SIDE CHAIN
REMARK 500 3 ARG B 166 0.27 SIDE CHAIN
REMARK 500 3 ARG B 168 0.31 SIDE CHAIN
REMARK 500 4 ARG A 10 0.31 SIDE CHAIN
REMARK 500 4 ARG A 54 0.23 SIDE CHAIN
REMARK 500 4 ARG A 58 0.29 SIDE CHAIN
REMARK 500 4 ARG A 70 0.18 SIDE CHAIN
REMARK 500 4 ARG A 72 0.31 SIDE CHAIN
REMARK 500 4 ARG B 106 0.31 SIDE CHAIN
REMARK 500 4 ARG B 150 0.23 SIDE CHAIN
REMARK 500 4 ARG B 154 0.29 SIDE CHAIN
REMARK 500 4 ARG B 166 0.18 SIDE CHAIN
REMARK 500 4 ARG B 168 0.30 SIDE CHAIN
REMARK 500 5 ARG A 10 0.26 SIDE CHAIN
REMARK 500 5 ARG A 54 0.22 SIDE CHAIN
REMARK 500 5 ARG A 58 0.22 SIDE CHAIN
REMARK 500 5 ARG A 70 0.28 SIDE CHAIN
REMARK 500 5 ARG A 72 0.32 SIDE CHAIN
REMARK 500 5 ARG B 106 0.26 SIDE CHAIN
REMARK 500 5 ARG B 150 0.22 SIDE CHAIN
REMARK 500 5 ARG B 154 0.22 SIDE CHAIN
REMARK 500 5 ARG B 166 0.28 SIDE CHAIN
REMARK 500 5 ARG B 168 0.32 SIDE CHAIN
REMARK 500
REMARK 500 THIS ENTRY HAS 100 PLANE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1Z09 A 1 96 UNP Q9NP97 DLC2A_HUMAN 1 96
DBREF 1Z09 B 97 192 UNP Q9NP97 DLC2A_HUMAN 1 96
SEQRES 1 A 96 MET ALA GLU VAL GLU GLU THR LEU LYS ARG LEU GLN SER
SEQRES 2 A 96 GLN LYS GLY VAL GLN GLY ILE ILE VAL VAL ASN THR GLU
SEQRES 3 A 96 GLY ILE PRO ILE LYS SER THR MET ASP ASN PRO THR THR
SEQRES 4 A 96 THR GLN TYR ALA SER LEU MET HIS SER PHE ILE LEU LYS
SEQRES 5 A 96 ALA ARG SER THR VAL ARG ASP ILE ASP PRO GLN ASN ASP
SEQRES 6 A 96 LEU THR PHE LEU ARG ILE ARG SER LYS LYS ASN GLU ILE
SEQRES 7 A 96 MET VAL ALA PRO ASP LYS ASP TYR PHE LEU ILE VAL ILE
SEQRES 8 A 96 GLN ASN PRO THR GLU
SEQRES 1 B 96 MET ALA GLU VAL GLU GLU THR LEU LYS ARG LEU GLN SER
SEQRES 2 B 96 GLN LYS GLY VAL GLN GLY ILE ILE VAL VAL ASN THR GLU
SEQRES 3 B 96 GLY ILE PRO ILE LYS SER THR MET ASP ASN PRO THR THR
SEQRES 4 B 96 THR GLN TYR ALA SER LEU MET HIS SER PHE ILE LEU LYS
SEQRES 5 B 96 ALA ARG SER THR VAL ARG ASP ILE ASP PRO GLN ASN ASP
SEQRES 6 B 96 LEU THR PHE LEU ARG ILE ARG SER LYS LYS ASN GLU ILE
SEQRES 7 B 96 MET VAL ALA PRO ASP LYS ASP TYR PHE LEU ILE VAL ILE
SEQRES 8 B 96 GLN ASN PRO THR GLU
HELIX 1 1 MET A 1 LEU A 11 1 11
HELIX 2 2 ASN A 36 ASP A 61 1 26
HELIX 3 3 MET B 97 LEU B 107 1 11
HELIX 4 4 ASN B 132 ASP B 157 1 26
SHEET 1 A10 PRO A 29 SER A 32 0
SHEET 2 A10 GLY A 19 ASN A 24 -1 N VAL A 22 O LYS A 31
SHEET 3 A10 TYR A 86 ILE A 91 -1 O PHE A 87 N VAL A 23
SHEET 4 A10 ILE A 78 PRO A 82 -1 N MET A 79 O VAL A 90
SHEET 5 A10 LEU A 69 ILE A 71 -1 N ILE A 71 O ILE A 78
SHEET 6 A10 LEU B 165 ILE B 167 -1 O ARG B 166 N ARG A 70
SHEET 7 A10 ILE B 174 PRO B 178 -1 O ILE B 174 N ILE B 167
SHEET 8 A10 TYR B 182 ILE B 187 -1 O VAL B 186 N MET B 175
SHEET 9 A10 GLY B 115 ASN B 120 -1 N VAL B 119 O PHE B 183
SHEET 10 A10 PRO B 125 SER B 128 -1 O LYS B 127 N VAL B 118
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes