Header list of 1yyj.pdb file
Complete list - r 2 2 Bytes
HEADER DE NOVO PROTEIN 25-FEB-05 1YYJ
TITLE THE NMR SOLUTION STRUCTURE OF A REDESIGNED APOCYTOCHROME B562:RD-
TITLE 2 APOCYT B562
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: REDESIGNED APOCYTOCHROME B562;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE
SOURCE 4 OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN).
KEYWDS FOUR HELIX PROTEIN, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE
KEYWDS 2 INITIATIVE, BERKELEY STRUCTURAL GENOMICS CENTER, BSGC, DE NOVO
KEYWDS 3 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR H.FENG,J.TAKEI,R.LIPSITZ,N.TJANDRA,Y.BAI,BERKELEY STRUCTURAL GENOMICS
AUTHOR 2 CENTER (BSGC)
REVDAT 3 02-MAR-22 1YYJ 1 REMARK
REVDAT 2 24-FEB-09 1YYJ 1 VERSN
REVDAT 1 25-AUG-05 1YYJ 0
JRNL AUTH H.FENG,J.TAKEI,R.LIPSITZ,N.TJANDRA,Y.BAI
JRNL TITL SPECIFIC NON-NATIVE HYDROPHOBIC INTERACTIONS IN A HIDDEN
JRNL TITL 2 FOLDING INTERMEDIATE: IMPLICATIONS FOR PROTEIN FOLDING
JRNL REF BIOCHEMISTRY V. 42 12461 2003
JRNL REFN ISSN 0006-2960
JRNL PMID 14580191
JRNL DOI 10.1021/BI035561S
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR NIH-2.9, X-PLOR NIH-2.9
REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1YYJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-05.
REMARK 100 THE DEPOSITION ID IS D_1000032073.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 4.84
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.5MM RD APOCYTOCHROME B562, 15N
REMARK 210 AND/OR 13C UNIFORMLY LABELED
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D HSQC; 3D_13C-SEPARATED_NOESY;
REMARK 210 3D_15N-SEPARATED_NOESY; HNHA; 3D
REMARK 210 HNCACB, 3D CBCA(CO)NH; 3D
REMARK 210 HBHA(CO)NH
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE
REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED
REMARK 210 ANNEALING, MOLECULAR DYNAMICS,
REMARK 210 MATRIX RELAXATION, TORSION ANGLE
REMARK 210 DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: RESIDUAL DIPOLAR COUPLING, 2D NOESY, 3D HNCA, ETC.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME;
REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 470 MODELS 1-10
REMARK 470 RES CSSEQI ATOMS
REMARK 470 GLU A 4 CG
REMARK 470 ASN A 80 C O
REMARK 470 GLU A 81 N CA CB
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O SER A 55 H GLU A 57 1.39
REMARK 500 O LYS A 27 HG1 THR A 31 1.44
REMARK 500 O VAL A 84 H GLN A 88 1.46
REMARK 500 O GLU A 8 H ASP A 12 1.47
REMARK 500 O HIS A 63 H ILE A 67 1.47
REMARK 500 O ILE A 17 H ALA A 20 1.48
REMARK 500 O ARG A 62 H ASP A 66 1.50
REMARK 500 O MET A 58 H PHE A 61 1.57
REMARK 500 O ALA A 36 H ALA A 40 1.59
REMARK 500 O LYS A 27 H THR A 31 1.59
REMARK 500 O ASN A 6 H LEU A 10 1.60
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ILE A 17 -72.19 -70.94
REMARK 500 1 ASP A 21 -13.51 67.13
REMARK 500 1 MET A 33 -73.15 -66.23
REMARK 500 1 LYS A 42 32.20 -74.32
REMARK 500 1 THR A 44 40.05 -156.91
REMARK 500 1 LYS A 47 105.93 82.89
REMARK 500 1 ASP A 50 42.59 -147.00
REMARK 500 1 LYS A 51 -143.07 -171.30
REMARK 500 1 ASP A 54 -126.73 65.89
REMARK 500 1 SER A 55 -37.44 -170.43
REMARK 500 1 PRO A 56 48.56 -54.02
REMARK 500 1 GLU A 57 29.71 45.58
REMARK 500 1 MET A 58 -6.59 63.73
REMARK 500 1 TYR A 105 30.86 -86.20
REMARK 500 2 ILE A 17 -72.99 -71.31
REMARK 500 2 ASP A 21 -11.00 59.13
REMARK 500 2 LYS A 42 4.00 -68.89
REMARK 500 2 THR A 44 69.61 -151.34
REMARK 500 2 PRO A 46 -94.33 -98.68
REMARK 500 2 LYS A 47 117.26 -171.57
REMARK 500 2 GLU A 49 30.59 -99.07
REMARK 500 2 ASP A 50 -53.72 -147.65
REMARK 500 2 LYS A 51 -161.03 -65.23
REMARK 500 2 ASP A 54 -137.72 64.63
REMARK 500 2 SER A 55 -38.92 -161.83
REMARK 500 2 PRO A 56 70.32 -49.21
REMARK 500 2 GLU A 57 32.22 39.47
REMARK 500 2 MET A 58 -8.70 64.73
REMARK 500 3 ILE A 17 -73.51 -70.16
REMARK 500 3 ASP A 21 -15.02 67.76
REMARK 500 3 THR A 44 69.18 -152.31
REMARK 500 3 LYS A 47 101.69 71.83
REMARK 500 3 ASP A 50 -59.50 -144.26
REMARK 500 3 LYS A 51 -162.96 -65.99
REMARK 500 3 ASP A 54 -143.99 76.27
REMARK 500 3 SER A 55 -26.62 -162.36
REMARK 500 3 PRO A 56 40.91 -56.43
REMARK 500 3 GLU A 57 25.56 49.87
REMARK 500 3 MET A 58 -5.08 63.95
REMARK 500 4 ILE A 17 -71.25 -71.23
REMARK 500 4 ASP A 21 -7.62 69.55
REMARK 500 4 LYS A 42 1.05 -57.62
REMARK 500 4 PRO A 46 -90.60 -84.96
REMARK 500 4 LYS A 47 122.23 -176.60
REMARK 500 4 GLU A 49 18.83 50.74
REMARK 500 4 ASP A 50 -55.00 -148.61
REMARK 500 4 LYS A 51 -162.59 -65.69
REMARK 500 4 ASP A 54 164.22 75.40
REMARK 500 4 PRO A 56 62.58 -39.98
REMARK 500 4 GLU A 57 29.08 36.63
REMARK 500
REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1RAC RELATED DB: PDB
REMARK 900 REDESIGNED APOCYTOCHROME B562
REMARK 900 RELATED ID: 1YYX RELATED DB: PDB
REMARK 900 REDESIGNED APOCYTOCHROME B562
DBREF 1YYJ A 1 106 PDB 1YYJ 1YYJ 1 106
SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN TRP GLU THR LEU ASN ASP ASN
SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL
SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP
SEQRES 4 A 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER
SEQRES 5 A 106 PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE
SEQRES 6 A 106 ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU
SEQRES 7 A 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA
SEQRES 8 A 106 GLU GLN LEU LYS THR THR ILE ARG ALA TYR ASN GLN LYS
SEQRES 9 A 106 TYR GLY
HELIX 1 1 ALA A 1 LYS A 19 1 19
HELIX 2 2 ASN A 22 GLN A 41 1 20
HELIX 3 3 MET A 58 ASN A 80 1 23
HELIX 4 4 LYS A 83 TYR A 105 1 23
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes