Header list of 1ywj.pdb file
Complete list - 2 20 Bytes
HEADER STRUCTURAL PROTEIN 18-FEB-05 1YWJ
TITLE STRUCTURE OF THE FBP11WW1 DOMAIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: FORMIN-BINDING PROTEIN 3;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: WW1 DOMAIN;
COMPND 5 SYNONYM: FORMIN BINDING PROTEIN 11;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2TK
KEYWDS WW DOMAIN, CLASS II, PROLINE-RICH PEPTIDES, PROTEIN-PROTEIN
KEYWDS 2 INTERACTIONS, STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR J.R.PIRES,C.PARTHIER,R.AIDO-MACHADO,U.WIEDEMANN,L.OTTE,G.BOEHM,
AUTHOR 2 R.RUDOLPH,H.OSCHKINAT
REVDAT 3 02-MAR-22 1YWJ 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1YWJ 1 VERSN
REVDAT 1 12-APR-05 1YWJ 0
JRNL AUTH J.R.PIRES,C.PARTHIER,R.AIDO-MACHADO,U.WIEDEMANN,L.OTTE,
JRNL AUTH 2 G.BOHM,R.RUDOLPH,H.OSCHKINAT
JRNL TITL STRUCTURAL BASIS FOR APPTPPPLPP PEPTIDE RECOGNITION BY THE
JRNL TITL 2 FBP11WW1 DOMAIN.
JRNL REF J.MOL.BIOL. V. 348 399 2005
JRNL REFN ISSN 0022-2836
JRNL PMID 15811376
JRNL DOI 10.1016/J.JMB.2005.02.056
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.1
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE
REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,
REMARK 3 SIMONSON,WARREN
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS ALSO REFINED WITH
REMARK 3 ARIA VER.1.2, AUTHORS: LINGE, J.P., O'DONGUE, S.I., NILGES, M.
REMARK 4
REMARK 4 1YWJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-05.
REMARK 100 THE DEPOSITION ID IS D_1000032001.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 100MM NACL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 1.8MM [U-15N,13C] FBP11WW1, 10MM
REMARK 210 PHOSPHATE BUFFER, 100MM NACL,
REMARK 210 0.1MM DTT, 0.1MM EDTA; 1.8MM [U-
REMARK 210 15N,13C] FBP11WW1, 10MM
REMARK 210 PHOSPHATE BUFFER, 100MM NACL,
REMARK 210 0.1MM DTT, 0.1MM EDTA; 1.8MM [U-
REMARK 210 15N] FBP11WW1, 10MM PHOSPHATE
REMARK 210 BUFFER, 100MM NACL, 0.1MM DTT,
REMARK 210 0.1MM EDTA; 1.8MM FBP11WW1, 10MM
REMARK 210 PHOSPHATE BUFFER, 100MM NACL,
REMARK 210 0.1MM DTT, 0.1MM EDTA
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : TRIPLE-RESONANCE; 3D_13C
REMARK 210 -SEPARATED_NOESY; 3D_15N-
REMARK 210 SEPARATED_NOESY; 2D NOESY; 2D
REMARK 210 TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR 3.2, SPARKY 3.1
REMARK 210 METHOD USED : AUTOMATED ASSIGNMENT OF NOES AND
REMARK 210 SIMULATED ANNELING WITH TORSION
REMARK 210 ANGLE DINAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-15
REMARK 465 RES C SSSEQI
REMARK 465 GLY A 4
REMARK 465 SER A 5
REMARK 465 ARG A 6
REMARK 465 ARG A 7
REMARK 465 ALA A 8
REMARK 465 SER A 9
REMARK 465 VAL A 10
REMARK 465 GLY A 11
REMARK 465 SER A 12
REMARK 465 ALA A 13
REMARK 465 LYS A 14
REMARK 465 ASP A 43
REMARK 465 ASP A 44
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LYS A 21 156.98 -49.45
REMARK 500 1 PRO A 23 151.32 -30.60
REMARK 500 1 ASP A 24 -4.77 74.19
REMARK 500 1 LYS A 35 48.11 80.24
REMARK 500 2 LYS A 21 160.49 -47.86
REMARK 500 2 PRO A 23 151.44 -31.19
REMARK 500 2 LYS A 35 53.89 90.12
REMARK 500 3 SER A 22 -177.96 -179.09
REMARK 500 3 PRO A 23 142.13 -22.21
REMARK 500 3 LYS A 35 49.95 81.96
REMARK 500 4 PRO A 23 149.88 -29.03
REMARK 500 4 LYS A 35 49.32 81.72
REMARK 500 5 LYS A 21 160.11 -49.54
REMARK 500 5 PRO A 23 150.89 -29.60
REMARK 500 5 LYS A 35 52.74 87.91
REMARK 500 6 PRO A 23 143.16 -27.24
REMARK 500 6 LYS A 35 52.14 87.34
REMARK 500 7 LYS A 21 153.10 -47.82
REMARK 500 7 PRO A 23 153.48 -31.19
REMARK 500 7 LYS A 35 51.45 84.29
REMARK 500 8 LYS A 21 153.26 -44.19
REMARK 500 8 PRO A 23 158.71 -36.19
REMARK 500 8 LYS A 35 48.32 81.88
REMARK 500 9 LYS A 21 155.68 -48.38
REMARK 500 9 PRO A 23 156.45 -34.50
REMARK 500 9 ASP A 24 -2.71 75.41
REMARK 500 9 GLU A 33 -74.28 -57.70
REMARK 500 9 LYS A 35 50.35 84.01
REMARK 500 9 LYS A 41 105.89 -59.29
REMARK 500 10 LYS A 21 152.38 -46.95
REMARK 500 10 PRO A 23 155.82 -34.34
REMARK 500 10 LYS A 35 54.45 91.38
REMARK 500 11 LYS A 21 155.42 -46.92
REMARK 500 11 PRO A 23 152.75 -34.62
REMARK 500 11 LYS A 35 50.29 81.04
REMARK 500 11 LYS A 41 104.66 -57.49
REMARK 500 12 PRO A 23 146.52 -28.84
REMARK 500 12 ASP A 24 -10.21 79.34
REMARK 500 12 LYS A 35 48.66 82.78
REMARK 500 13 LYS A 21 152.94 -46.58
REMARK 500 13 PRO A 23 -61.15 -17.33
REMARK 500 13 ASP A 24 25.98 -70.61
REMARK 500 13 LYS A 35 51.06 83.58
REMARK 500 14 LYS A 21 154.06 -46.91
REMARK 500 14 PRO A 23 -57.25 -19.22
REMARK 500 14 ASP A 24 25.56 -69.81
REMARK 500 14 LYS A 35 47.76 81.81
REMARK 500 15 LYS A 21 154.22 -48.90
REMARK 500 15 PRO A 23 152.02 -32.05
REMARK 500 15 ASP A 24 0.00 71.80
REMARK 500
REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1F8A RELATED DB: PDB
REMARK 900 RELATED ID: 1I5H RELATED DB: PDB
REMARK 900 RELATED ID: 1EG4 RELATED DB: PDB
REMARK 900 RELATED ID: 1CKA RELATED DB: PDB
REMARK 900 RELATED ID: 1O6W RELATED DB: PDB
REMARK 900 RELATED ID: 1YWI RELATED DB: PDB
REMARK 900 THE SAME PROTEIN OF THE FBP11WW1 DOMAIN COMPLEXED TO THE PEPTIDE
REMARK 900 APPTPPPLPP
DBREF 1YWJ A 13 44 UNP O75400 FNBP3_HUMAN 142 173
SEQADV 1YWJ GLY A 4 UNP O75400 CLONING ARTIFACT
SEQADV 1YWJ SER A 5 UNP O75400 CLONING ARTIFACT
SEQADV 1YWJ ARG A 6 UNP O75400 CLONING ARTIFACT
SEQADV 1YWJ ARG A 7 UNP O75400 CLONING ARTIFACT
SEQADV 1YWJ ALA A 8 UNP O75400 CLONING ARTIFACT
SEQADV 1YWJ SER A 9 UNP O75400 CLONING ARTIFACT
SEQADV 1YWJ VAL A 10 UNP O75400 CLONING ARTIFACT
SEQADV 1YWJ GLY A 11 UNP O75400 CLONING ARTIFACT
SEQADV 1YWJ SER A 12 UNP O75400 CLONING ARTIFACT
SEQRES 1 A 41 GLY SER ARG ARG ALA SER VAL GLY SER ALA LYS SER MET
SEQRES 2 A 41 TRP THR GLU HIS LYS SER PRO ASP GLY ARG THR TYR TYR
SEQRES 3 A 41 TYR ASN THR GLU THR LYS GLN SER THR TRP GLU LYS PRO
SEQRES 4 A 41 ASP ASP
HELIX 1 1 PRO A 23 GLY A 25 5 3
SHEET 1 A 3 TRP A 17 SER A 22 0
SHEET 2 A 3 ARG A 26 ASN A 31 -1 O TYR A 30 N THR A 18
SHEET 3 A 3 GLN A 36 THR A 38 -1 O GLN A 36 N ASN A 31
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 2 20 Bytes