Header list of 1yuf.pdb file
Complete list - 2 20 Bytes
HEADER GROWTH FACTOR 01-APR-96 1YUF
TITLE TYPE ALPHA TRANSFORMING GROWTH FACTOR, NMR, 16 MODELS WITHOUT ENERGY
TITLE 2 MINIMIZATION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TRANSFORMING GROWTH FACTOR ALPHA;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: TGF-ALPHA, H-TGF-ALPHA;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HUMAN TGF-ALPHA 1YUF;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTE5;
SOURCE 9 EXPRESSION_SYSTEM_GENE: HUMAN TGF-ALPHA 1YUF
KEYWDS EGF-LIKE DOMAIN STRUCTURE, GROWTH FACTOR
EXPDTA SOLUTION NMR
NUMMDL 16
AUTHOR F.J.MOY,G.T.MONTELIONE,H.A.SCHERAGA
REVDAT 3 02-MAR-22 1YUF 1 REMARK
REVDAT 2 24-FEB-09 1YUF 1 VERSN
REVDAT 1 17-AUG-96 1YUF 0
JRNL AUTH F.J.MOY,Y.C.LI,P.RAUENBUEHLER,M.E.WINKLER,H.A.SCHERAGA,
JRNL AUTH 2 G.T.MONTELIONE
JRNL TITL SOLUTION STRUCTURE OF HUMAN TYPE-ALPHA TRANSFORMING GROWTH
JRNL TITL 2 FACTOR DETERMINED BY HETERONUCLEAR NMR SPECTROSCOPY AND
JRNL TITL 3 REFINED BY ENERGY MINIMIZATION WITH RESTRAINTS.
JRNL REF BIOCHEMISTRY V. 32 7334 1993
JRNL REFN ISSN 0006-2960
JRNL PMID 8338831
JRNL DOI 10.1021/BI00080A003
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH A.R.FADEL,D.Q.JIN,G.T.MONTELIONE,R.M.LEVY
REMARK 1 TITL CRANKSHAFT MOTIONS OF THE POLYPEPTIDE BACKBONE IN MOLECULAR
REMARK 1 TITL 2 DYNAMICS SIMULATIONS OF HUMAN TYPE-ALPHA TRANSFORMING GROWTH
REMARK 1 TITL 3 FACTOR
REMARK 1 REF J.BIOMOL.NMR V. 6 221 1995
REMARK 1 REFN ISSN 0925-2738
REMARK 1 REFERENCE 2
REMARK 1 AUTH Y.C.LI,G.T.MONTELIONE
REMARK 1 TITL HUMAN TYPE-ALPHA TRANSFORMING GROWTH FACTOR UNDERGOES SLOW
REMARK 1 TITL 2 CONFORMATIONAL EXCHANGE BETWEEN MULTIPLE BACKBONE
REMARK 1 TITL 3 CONFORMATIONS AS CHARACTERIZED BY NITROGEN-15 RELAXATION
REMARK 1 TITL 4 MEASUREMENTS
REMARK 1 REF BIOCHEMISTRY V. 34 2408 1995
REMARK 1 REFN ISSN 0006-2960
REMARK 1 REFERENCE 3
REMARK 1 AUTH G.T.MONTELIONE,M.E.WINKLER,L.E.BURTON,E.RINDERKNECHT,
REMARK 1 AUTH 2 M.B.SPORN,G.WAGNER
REMARK 1 TITL SEQUENCE-SPECIFIC 1H-NMR ASSIGNMENTS AND IDENTIFICATION OF
REMARK 1 TITL 2 TWO SMALL ANTIPARALLEL BETA-SHEETS IN THE SOLUTION STRUCTURE
REMARK 1 TITL 3 OF RECOMBINANT HUMAN TRANSFORMING GROWTH FACTOR ALPHA
REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 86 1519 1989
REMARK 1 REFN ISSN 0027-8424
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DISMAN
REMARK 3 AUTHORS : BRAUN,GO
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1YUF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000177445.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : NULL
REMARK 210 PH : NULL
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : NULL
REMARK 210 SPECTROMETER MODEL : NULL
REMARK 210 SPECTROMETER MANUFACTURER : NULL
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : NULL
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O VAL A 1 H SER A 3 1.50
REMARK 500 H THR A 20 O CYS A 34 1.60
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 VAL A 2 -56.42 67.16
REMARK 500 1 SER A 3 157.36 -44.63
REMARK 500 1 ASN A 6 -87.62 -153.89
REMARK 500 1 ASP A 10 35.78 -167.15
REMARK 500 1 SER A 11 -42.04 88.13
REMARK 500 1 HIS A 18 78.65 -170.85
REMARK 500 1 VAL A 25 -83.54 -57.21
REMARK 500 1 GLN A 26 -35.03 -34.82
REMARK 500 1 GLU A 27 52.83 -115.66
REMARK 500 1 ASP A 28 95.99 -18.35
REMARK 500 1 CYS A 34 -155.37 -65.33
REMARK 500 1 HIS A 35 -76.33 -131.31
REMARK 500 1 SER A 36 145.73 159.26
REMARK 500 1 TYR A 38 -168.56 -105.67
REMARK 500 1 CYS A 43 35.03 87.08
REMARK 500 1 ASP A 47 175.64 52.07
REMARK 500 1 LEU A 49 48.52 -154.17
REMARK 500 2 VAL A 2 -51.92 -126.17
REMARK 500 2 SER A 3 160.01 -44.31
REMARK 500 2 HIS A 4 133.66 177.64
REMARK 500 2 PHE A 5 39.26 36.87
REMARK 500 2 ASP A 7 23.31 48.10
REMARK 500 2 CYS A 8 177.35 -51.21
REMARK 500 2 PRO A 9 -168.40 -75.03
REMARK 500 2 ASP A 10 65.92 -107.01
REMARK 500 2 SER A 11 -39.55 92.29
REMARK 500 2 THR A 13 -84.34 -46.79
REMARK 500 2 PHE A 15 114.65 68.73
REMARK 500 2 HIS A 18 80.80 -176.08
REMARK 500 2 ARG A 22 110.24 -162.62
REMARK 500 2 LEU A 24 68.92 -67.95
REMARK 500 2 ASP A 28 67.66 37.77
REMARK 500 2 CYS A 34 -169.49 -60.16
REMARK 500 2 HIS A 35 -86.49 -148.69
REMARK 500 2 TYR A 38 -159.80 -72.00
REMARK 500 2 VAL A 39 -124.37 -73.12
REMARK 500 2 ALA A 41 -89.81 -38.19
REMARK 500 2 ASP A 47 161.18 -41.43
REMARK 500 2 LEU A 49 66.10 -172.32
REMARK 500 3 SER A 3 94.75 -49.96
REMARK 500 3 ASN A 6 -77.22 -100.56
REMARK 500 3 ASP A 7 -179.74 -50.67
REMARK 500 3 CYS A 8 -49.75 158.44
REMARK 500 3 ASP A 10 44.78 -107.97
REMARK 500 3 SER A 11 25.95 80.34
REMARK 500 3 HIS A 12 95.94 52.44
REMARK 500 3 THR A 13 -63.36 -106.05
REMARK 500 3 GLN A 14 37.31 -170.61
REMARK 500 3 HIS A 18 65.27 -158.77
REMARK 500 3 ASP A 28 53.12 35.69
REMARK 500
REMARK 500 THIS ENTRY HAS 300 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 22 0.30 SIDE CHAIN
REMARK 500 1 ARG A 42 0.28 SIDE CHAIN
REMARK 500 2 ARG A 22 0.28 SIDE CHAIN
REMARK 500 2 ARG A 42 0.28 SIDE CHAIN
REMARK 500 3 ARG A 22 0.08 SIDE CHAIN
REMARK 500 3 ARG A 42 0.30 SIDE CHAIN
REMARK 500 4 ARG A 22 0.22 SIDE CHAIN
REMARK 500 4 ARG A 42 0.26 SIDE CHAIN
REMARK 500 5 ARG A 22 0.29 SIDE CHAIN
REMARK 500 5 ARG A 42 0.10 SIDE CHAIN
REMARK 500 6 ARG A 22 0.16 SIDE CHAIN
REMARK 500 6 ARG A 42 0.30 SIDE CHAIN
REMARK 500 7 ARG A 42 0.28 SIDE CHAIN
REMARK 500 8 ARG A 22 0.28 SIDE CHAIN
REMARK 500 8 ARG A 42 0.30 SIDE CHAIN
REMARK 500 9 ARG A 22 0.18 SIDE CHAIN
REMARK 500 9 ARG A 42 0.29 SIDE CHAIN
REMARK 500 10 ARG A 22 0.30 SIDE CHAIN
REMARK 500 11 ARG A 22 0.10 SIDE CHAIN
REMARK 500 11 ARG A 42 0.22 SIDE CHAIN
REMARK 500 12 ARG A 22 0.22 SIDE CHAIN
REMARK 500 12 ARG A 42 0.30 SIDE CHAIN
REMARK 500 13 ARG A 22 0.27 SIDE CHAIN
REMARK 500 13 ARG A 42 0.26 SIDE CHAIN
REMARK 500 14 ARG A 22 0.28 SIDE CHAIN
REMARK 500 14 ARG A 42 0.27 SIDE CHAIN
REMARK 500 15 ARG A 22 0.12 SIDE CHAIN
REMARK 500 16 ARG A 42 0.26 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1YUF A 1 50 UNP P01135 TGFA_HUMAN 40 89
SEQRES 1 A 50 VAL VAL SER HIS PHE ASN ASP CYS PRO ASP SER HIS THR
SEQRES 2 A 50 GLN PHE CYS PHE HIS GLY THR CYS ARG PHE LEU VAL GLN
SEQRES 3 A 50 GLU ASP LYS PRO ALA CYS VAL CYS HIS SER GLY TYR VAL
SEQRES 4 A 50 GLY ALA ARG CYS GLU HIS ALA ASP LEU LEU ALA
HELIX 1 1 HIS A 12 PHE A 15 5 4
SHEET 1 A 2 ARG A 22 LEU A 24 0
SHEET 2 A 2 LYS A 29 ALA A 31 -1 N ALA A 31 O ARG A 22
SSBOND 1 CYS A 8 CYS A 21 1555 1555 1.92
SSBOND 2 CYS A 16 CYS A 32 1555 1555 2.36
SSBOND 3 CYS A 34 CYS A 43 1555 1555 1.91
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 2 20 Bytes