Header list of 1ysg.pdb file
Complete list - 2 20 Bytes
HEADER APOPTOSIS 08-FEB-05 1YSG
TITLE SOLUTION STRUCTURE OF THE ANTI-APOPTOTIC PROTEIN BCL-XL IN COMPLEX
TITLE 2 WITH "SAR BY NMR" LIGANDS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: APOPTOSIS REGULATOR BCL-X;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: BCL-2-LIKE 1 PROTEIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BCL2L1, BCL2L, BCLX;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30B
KEYWDS COMPLEX, APOPTOSIS
EXPDTA SOLUTION NMR
AUTHOR T.OLTERSDORF,S.W.ELMORE,A.R.SHOEMAKER,R.C.ARMSTRONG,D.J.AUGERI,
AUTHOR 2 B.A.BELLI,M.BRUNCKO,T.L.DECKWERTH,J.DINGES,P.J.HAJDUK,M.K.JOSEPH,
AUTHOR 3 S.KITADA,S.J.KORSMEYER,A.R.KUNZER,A.LETAI,C.LI,M.J.MITTEN,
AUTHOR 4 D.G.NETTESHEIM,S.NG,P.M.NIMMER,J.M.O'CONNOR,A.OLEKSIJEW,A.M.PETROS,
AUTHOR 5 J.C.REED,W.SHEN,S.K.TAHIR,C.B.THOMPSON,K.J.TOMASELLI,B.WANG,
AUTHOR 6 M.D.WENDT,H.ZHANG,S.W.FESIK,S.H.ROSENBERG
REVDAT 4 02-MAR-22 1YSG 1 REMARK SEQADV
REVDAT 3 24-FEB-09 1YSG 1 VERSN
REVDAT 2 18-DEC-07 1YSG 1 REMARK
REVDAT 1 07-JUN-05 1YSG 0
JRNL AUTH T.OLTERSDORF,S.W.ELMORE,A.R.SHOEMAKER,R.C.ARMSTRONG,
JRNL AUTH 2 D.J.AUGERI,B.A.BELLI,M.BRUNCKO,T.L.DECKWERTH,J.DINGES,
JRNL AUTH 3 P.J.HAJDUK,M.K.JOSEPH,S.KITADA,S.J.KORSMEYER,A.R.KUNZER,
JRNL AUTH 4 A.LETAI,C.LI,M.J.MITTEN,D.G.NETTESHEIM,S.NG,P.M.NIMMER,
JRNL AUTH 5 J.M.O'CONNOR,A.OLEKSIJEW,A.M.PETROS,J.C.REED,W.SHEN,
JRNL AUTH 6 S.K.TAHIR,C.B.THOMPSON,K.J.TOMASELLI,B.WANG,M.D.WENDT,
JRNL AUTH 7 H.ZHANG,S.W.FESIK,S.H.ROSENBERG
JRNL TITL AN INHIBITOR OF BCL-2 FAMILY PROTEINS INDUCES REGRESSION OF
JRNL TITL 2 SOLID TUMOURS
JRNL REF NATURE V. 435 677 2005
JRNL REFN ISSN 0028-0836
JRNL PMID 15902208
JRNL DOI 10.1038/NATURE03579
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1YSG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-05.
REMARK 100 THE DEPOSITION ID IS D_1000031878.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 50 MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1 MM BCL-XL U-15N,13C; 50 MM
REMARK 210 SODIUM PHOSPHATE, 5 MM
REMARK 210 DEUTERATED DITHIOTHREITOL, 100%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_13C
REMARK 210 -EDITED_12C-FILTERED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 MET A 3 55.65 34.56
REMARK 500 GLN A 7 32.34 -166.00
REMARK 500 SER A 27 -158.70 66.67
REMARK 500 TRP A 28 -45.06 -147.78
REMARK 500 PHE A 31 -73.94 -55.58
REMARK 500 ASP A 33 -88.09 60.40
REMARK 500 VAL A 34 141.68 60.73
REMARK 500 ASN A 37 -78.74 -57.00
REMARK 500 ARG A 38 -78.48 173.78
REMARK 500 THR A 39 70.78 65.85
REMARK 500 GLU A 43 -88.25 59.69
REMARK 500 THR A 45 -35.08 177.15
REMARK 500 GLU A 46 46.56 32.11
REMARK 500 LEU A 103 -39.91 -175.42
REMARK 500 PHE A 109 33.60 -96.87
REMARK 500 ALA A 123 -77.44 -175.29
REMARK 500 GLN A 125 -73.13 -60.56
REMARK 500 PHE A 135 59.95 -102.16
REMARK 500 ARG A 136 -60.72 -133.36
REMARK 500 LYS A 161 -76.46 -74.06
REMARK 500 GLU A 162 37.55 -178.12
REMARK 500 ASP A 180 12.73 -140.33
REMARK 500 LEU A 182 -36.82 -176.70
REMARK 500 TYR A 199 -44.92 -134.62
REMARK 500 ALA A 203 -38.08 -178.94
REMARK 500 ALA A 204 -81.40 -74.68
REMARK 500 ARG A 208 30.73 -146.88
REMARK 500 LYS A 209 82.85 -66.47
REMARK 500 GLU A 212 55.86 -118.83
REMARK 500 LEU A 214 -98.37 -56.07
REMARK 500 GLU A 215 23.12 48.18
REMARK 500 HIS A 217 23.74 48.76
REMARK 500 HIS A 218 51.84 171.06
REMARK 500 HIS A 219 12.13 -141.55
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 10 0.29 SIDE CHAIN
REMARK 500 ARG A 38 0.32 SIDE CHAIN
REMARK 500 ARG A 95 0.26 SIDE CHAIN
REMARK 500 ARG A 104 0.29 SIDE CHAIN
REMARK 500 ARG A 106 0.26 SIDE CHAIN
REMARK 500 ARG A 107 0.24 SIDE CHAIN
REMARK 500 ARG A 136 0.25 SIDE CHAIN
REMARK 500 ARG A 143 0.32 SIDE CHAIN
REMARK 500 ARG A 169 0.31 SIDE CHAIN
REMARK 500 ARG A 208 0.29 SIDE CHAIN
REMARK 500 ARG A 213 0.32 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4FC A 1000
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TN1 A 1001
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1LXL RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF SAME PROTEIN, UNCOMPLEXED.
REMARK 900 RELATED ID: 1MAZ RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF SAME PROTEIN, UNCOMPLEXED.
REMARK 900 RELATED ID: 1BXL RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF SAME PROTEIN COMPLEXED TO BAK PEPTIDE
REMARK 900 RELATED ID: 1G5J RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF SAME PROTEIN COMPLEXED TO BAD PEPTIDE
REMARK 900 RELATED ID: 1YSI RELATED DB: PDB
REMARK 900 RELATED ID: 1YSX RELATED DB: PDB
REMARK 900 RELATED ID: 1YSN RELATED DB: PDB
REMARK 900 RELATED ID: 1YSW RELATED DB: PDB
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 RESIDUES 49-88 (SEQUENCE DATABASE RESIDUES 45-84)
REMARK 999 ARE NOT PRESENT DUE TO A LOOP DELETION.
DBREF 1YSG A 5 48 UNP Q07817 BCLX_HUMAN 1 44
DBREF 1YSG A 89 213 UNP Q07817 BCLX_HUMAN 85 209
SEQADV 1YSG MET A 1 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG SER A 2 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG MET A 3 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG ALA A 4 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG LEU A 214 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG GLU A 215 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG HIS A 216 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG HIS A 217 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG HIS A 218 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG HIS A 219 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG HIS A 220 UNP Q07817 CLONING ARTIFACT
SEQADV 1YSG HIS A 181 UNP Q07817 CLONING ARTIFACT
SEQRES 1 A 181 MET SER MET ALA MET SER GLN SER ASN ARG GLU LEU VAL
SEQRES 2 A 181 VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY TYR
SEQRES 3 A 181 SER TRP SER GLN PHE SER ASP VAL GLU GLU ASN ARG THR
SEQRES 4 A 181 GLU ALA PRO GLU GLY THR GLU SER GLU ALA VAL LYS GLN
SEQRES 5 A 181 ALA LEU ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR
SEQRES 6 A 181 ARG ARG ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE
SEQRES 7 A 181 THR PRO GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL
SEQRES 8 A 181 ASN GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE
SEQRES 9 A 181 VAL ALA PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU
SEQRES 10 A 181 SER VAL ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE
SEQRES 11 A 181 ALA ALA TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU
SEQRES 12 A 181 PRO TRP ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL
SEQRES 13 A 181 GLU LEU TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS
SEQRES 14 A 181 GLY GLN GLU ARG LEU GLU HIS HIS HIS HIS HIS HIS
HET 4FC A1000 24
HET TN1 A1001 23
HETNAM 4FC 4'-FLUORO-1,1'-BIPHENYL-4-CARBOXYLIC ACID
HETNAM TN1 5,6,7,8-TETRAHYDRONAPHTHALEN-1-OL
FORMUL 2 4FC C13 H9 F O2
FORMUL 3 TN1 C10 H12 O
HELIX 1 1 ASN A 9 GLY A 25 1 17
HELIX 2 2 ALA A 89 TYR A 105 1 17
HELIX 3 3 ALA A 123 PHE A 135 1 13
HELIX 4 4 ASN A 140 GLU A 162 1 23
HELIX 5 5 LEU A 166 ASP A 180 1 15
HELIX 6 6 LEU A 182 GLY A 190 1 9
HELIX 7 7 GLY A 191 TYR A 199 1 9
HELIX 8 8 LEU A 214 HIS A 218 5 5
SITE 1 AC1 8 PHE A 101 TYR A 105 ALA A 108 PHE A 109
SITE 2 AC1 8 LEU A 134 GLY A 142 ARG A 143 ALA A 146
SITE 1 AC2 5 ALA A 97 GLU A 100 PHE A 101 VAL A 145
SITE 2 AC2 5 TYR A 199
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 2 20 Bytes