Header list of 1y7q.pdb file
Complete list - t 20 2 Bytes
HEADER TRANSCRIPTION 09-DEC-04 1Y7Q
TITLE MAMMALIAN SCAN DOMAIN DIMER IS A DOMAIN-SWAPPED HOMOLOGUE OF THE HIV
TITLE 2 CAPSID C-TERMINAL DOMAIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ZINC FINGER PROTEIN 174;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: SCAN DOMAIN, RESIDUES 37-132;
COMPND 5 SYNONYM: AW-1; ZINC FINGER AND SCAN DOMAIN CONTAINING PROTEIN 8;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ZNF174, ZSCAN8;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS SCAN DOMAIN; RETROVIRAL CAPSID C-TERMINAL DOMAIN; DIMER; C2H2 ZINC
KEYWDS 2 FINGER ASSOCIATED, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR D.IVANOV,J.R.STONE,J.L.MAKI,T.COLLINS,G.WAGNER
REVDAT 3 20-OCT-21 1Y7Q 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1Y7Q 1 VERSN
REVDAT 1 18-JAN-05 1Y7Q 0
JRNL AUTH D.IVANOV,J.R.STONE,J.L.MAKI,T.COLLINS,G.WAGNER
JRNL TITL MAMMALIAN SCAN DOMAIN DIMER IS A DOMAIN-SWAPPED HOMOLOG OF
JRNL TITL 2 THE HIV CAPSID C-TERMINAL DOMAIN
JRNL REF MOL.CELL V. 17 137 2005
JRNL REFN ISSN 1097-2765
JRNL PMID 15629724
JRNL DOI 10.1016/J.MOLCEL.2004.12.015
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CYANA 1.0.6, CYANA 1.0.6
REMARK 3 AUTHORS : HERMANN, T.,GUNTERT, P., WUTHRICH, K. (CYANA),
REMARK 3 HERMANN, T.,GUNTERT, P., WUTHRICH, K. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1Y7Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-05.
REMARK 100 THE DEPOSITION ID IS D_1000031221.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 200MM NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 2 MM SCAN DOMAIN, U-15N,13C; 2
REMARK 210 MM SCAN DOMAIN, U-15N,2D; 2 MM
REMARK 210 SCAN DOMAIN, UNLABELED
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ
REMARK 210 SPECTROMETER MODEL : DMX; UNITYPLUS
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE .04
REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED
REMARK 210 ANNEALING TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON
REMARK 210 -BOND ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O PRO B 99 H ILE B 102 1.49
REMARK 500 O PRO B 60 H ALA B 63 1.51
REMARK 500 O LEU B 64 H ARG B 68 1.59
REMARK 500 O LEU B 89 HE21 GLN B 93 1.60
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 36 131.81 179.84
REMARK 500 1 ASN A 38 166.16 57.82
REMARK 500 1 CYS A 39 91.12 178.65
REMARK 500 1 GLU A 43 -40.08 -175.26
REMARK 500 1 CYS A 53 124.75 60.85
REMARK 500 1 TYR A 54 117.49 -33.98
REMARK 500 1 GLN A 55 -82.02 -179.36
REMARK 500 1 GLU A 56 -62.28 -29.15
REMARK 500 1 PRO A 60 -75.66 -75.04
REMARK 500 1 GLN A 76 61.24 38.33
REMARK 500 1 LEU A 79 -34.80 177.32
REMARK 500 1 THR A 81 -159.40 -61.61
REMARK 500 1 PRO A 99 -162.03 -74.94
REMARK 500 1 ARG A 109 122.41 65.20
REMARK 500 1 CYS A 110 -40.41 179.94
REMARK 500 1 MET A 112 -39.88 -173.39
REMARK 500 1 ALA A 127 -165.79 -111.09
REMARK 500 1 SER A 128 74.06 -162.34
REMARK 500 1 CYS B 39 79.15 46.60
REMARK 500 1 ASP B 41 86.67 -165.69
REMARK 500 1 GLU B 43 50.37 -156.78
REMARK 500 1 ARG B 50 96.56 -38.89
REMARK 500 1 ARG B 51 52.48 81.38
REMARK 500 1 CYS B 53 119.35 92.63
REMARK 500 1 GLN B 55 27.87 39.96
REMARK 500 1 GLU B 56 94.62 35.44
REMARK 500 1 SER B 58 -29.78 90.02
REMARK 500 1 ARG B 68 -34.32 -34.71
REMARK 500 1 GLN B 76 127.18 56.61
REMARK 500 1 GLU B 78 52.34 -178.87
REMARK 500 1 THR B 81 -155.54 -61.77
REMARK 500 1 GLU B 92 -36.91 -35.75
REMARK 500 1 GLU B 100 -33.63 -34.89
REMARK 500 1 VAL B 106 -60.78 -105.55
REMARK 500 1 HIS B 108 12.05 88.15
REMARK 500 1 ARG B 109 40.69 160.99
REMARK 500 1 CYS B 110 -170.40 162.13
REMARK 500 1 MET B 112 -77.73 -143.43
REMARK 500 1 ARG B 126 71.23 175.53
REMARK 500 1 ALA B 127 -167.07 -57.23
REMARK 500 1 SER B 128 -39.82 -170.68
REMARK 500 1 LYS B 130 150.55 -47.58
REMARK 500 2 ASP A 41 84.13 -159.97
REMARK 500 2 PHE A 52 -71.46 -48.69
REMARK 500 2 CYS A 53 63.50 70.36
REMARK 500 2 TYR A 54 -152.62 33.85
REMARK 500 2 GLN A 55 -61.02 71.55
REMARK 500 2 SER A 58 26.15 41.62
REMARK 500 2 PRO A 60 -89.16 -74.96
REMARK 500 2 GLN A 76 62.24 37.25
REMARK 500
REMARK 500 THIS ENTRY HAS 847 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1Y7Q A 37 132 UNP Q15697 ZN174_HUMAN 37 132
DBREF 1Y7Q B 37 132 UNP Q15697 ZN174_HUMAN 37 132
SEQADV 1Y7Q GLY A 35 UNP Q15697 CLONING ARTIFACT
SEQADV 1Y7Q SER A 36 UNP Q15697 CLONING ARTIFACT
SEQADV 1Y7Q GLU A 100 UNP Q15697 PRO 100 ENGINEERED MUTATION
SEQADV 1Y7Q LEU A 111 UNP Q15697 PRO 111 ENGINEERED MUTATION
SEQADV 1Y7Q GLY B 35 UNP Q15697 CLONING ARTIFACT
SEQADV 1Y7Q SER B 36 UNP Q15697 CLONING ARTIFACT
SEQADV 1Y7Q GLU B 100 UNP Q15697 PRO 100 ENGINEERED MUTATION
SEQADV 1Y7Q LEU B 111 UNP Q15697 PRO 111 ENGINEERED MUTATION
SEQRES 1 A 98 GLY SER LYS ASN CYS PRO ASP PRO GLU LEU CYS ARG GLN
SEQRES 2 A 98 SER PHE ARG ARG PHE CYS TYR GLN GLU VAL SER GLY PRO
SEQRES 3 A 98 GLN GLU ALA LEU SER GLN LEU ARG GLN LEU CYS ARG GLN
SEQRES 4 A 98 TRP LEU GLN PRO GLU LEU HIS THR LYS GLU GLN ILE LEU
SEQRES 5 A 98 GLU LEU LEU VAL MET GLU GLN PHE LEU THR ILE LEU PRO
SEQRES 6 A 98 GLU GLU ILE GLN ALA ARG VAL ARG HIS ARG CYS LEU MET
SEQRES 7 A 98 SER SER LYS GLU ILE VAL THR LEU VAL GLU ASP PHE HIS
SEQRES 8 A 98 ARG ALA SER LYS LYS PRO LYS
SEQRES 1 B 98 GLY SER LYS ASN CYS PRO ASP PRO GLU LEU CYS ARG GLN
SEQRES 2 B 98 SER PHE ARG ARG PHE CYS TYR GLN GLU VAL SER GLY PRO
SEQRES 3 B 98 GLN GLU ALA LEU SER GLN LEU ARG GLN LEU CYS ARG GLN
SEQRES 4 B 98 TRP LEU GLN PRO GLU LEU HIS THR LYS GLU GLN ILE LEU
SEQRES 5 B 98 GLU LEU LEU VAL MET GLU GLN PHE LEU THR ILE LEU PRO
SEQRES 6 B 98 GLU GLU ILE GLN ALA ARG VAL ARG HIS ARG CYS LEU MET
SEQRES 7 B 98 SER SER LYS GLU ILE VAL THR LEU VAL GLU ASP PHE HIS
SEQRES 8 B 98 ARG ALA SER LYS LYS PRO LYS
HELIX 1 1 GLU A 43 ARG A 51 1 9
HELIX 2 2 PRO A 60 GLN A 76 1 17
HELIX 3 3 THR A 81 LEU A 98 1 18
HELIX 4 4 GLU A 100 HIS A 108 1 9
HELIX 5 5 SER A 113 ARG A 126 1 14
HELIX 6 6 GLU B 43 ARG B 50 1 8
HELIX 7 7 GLN B 61 GLN B 76 1 16
HELIX 8 8 THR B 81 LEU B 98 1 18
HELIX 9 9 GLU B 100 ARG B 107 1 8
HELIX 10 10 SER B 113 ALA B 127 1 15
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - t 20 2 Bytes