Header list of 1xv6.pdb file
Complete list - r 2 2 Bytes
HEADER RNA 27-OCT-04 1XV6
TITLE THE SOLUTION STRUCTURE OF 2',5'-LINKED 3'-O-(2-METHOXYETHYL)-RNA
TITLE 2 HAIRPIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 5'-R(*(C2L)P*(G2L)P*(C2L)P*(G2L)P*(A2L)P*(A2L)P*(U2L)
COMPND 3 P*(U2L)P*(C2L)P*(G2L)P*(C2L)P*(G2L))-2';
COMPND 4 CHAIN: A;
COMPND 5 SYNONYM: 2'-MOE RNA;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: SOLID PHASE SYNTHESIS, PHOSPHORAMIDITE CHEMISTRY
KEYWDS HAIRPIN, (2', 5')-RNA, 3'-O-(2-METHOXYETHYL) RIBOSE, RNA
EXPDTA SOLUTION NMR
NUMMDL 30
AUTHOR M.PLEVNIK,Z.GDANIEC,J.PLAVEC
REVDAT 3 02-MAR-22 1XV6 1 REMARK LINK
REVDAT 2 24-FEB-09 1XV6 1 VERSN
REVDAT 1 05-APR-05 1XV6 0
JRNL AUTH M.PLEVNIK,Z.GDANIEC,J.PLAVEC
JRNL TITL SOLUTION STRUCTURE OF A MODIFIED 2',5'-LINKED RNA HAIRPIN
JRNL TITL 2 INVOLVED IN AN EQUILIBRIUM WITH DUPLEX
JRNL REF NUCLEIC ACIDS RES. V. 33 1749 2005
JRNL REFN ISSN 0305-1048
JRNL PMID 15788747
JRNL DOI 10.1093/NAR/GKI318
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1B, AMBER 6
REMARK 3 AUTHORS : VARIAN (VNMR), KOLLMAN ET AL. (AMBER)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 STRUCTURES WERE REFINED BY NMR RESTRAINED MOLECULAR DYNAMICS IN
REMARK 3 TWO STAGES USING A GENERALIZED BORN (GB) IMPLICIT SOLVATION MODEL.
REMARK 3 THE RESULTING STRUCTURES WERE SUBJECTED TO ENERGY MINIMIZATION.
REMARK 3 2',5' PHOSPHODIESTER LINKAGES BETWEEN RESIDUES, O3* OF EACH RIBOSE
REMARK 3 MODIFIED BY METHOXYETHYL.
REMARK 4
REMARK 4 1XV6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-04.
REMARK 100 THE DEPOSITION ID IS D_1000030800.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 7.4
REMARK 210 IONIC STRENGTH : 50MM NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.9MM HAIRPIN, 100% D2O, 50MM
REMARK 210 NACL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : FELIX 2000
REMARK 210 METHOD USED : SIMULATED ANNEALING, ENERGY
REMARK 210 MINIMIZATION
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 30
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30
REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES
REMARK 210 SUBMITTED
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 18
REMARK 210
REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING STANDARD 2D HOMO- AND
REMARK 210 HETERONUCLEAR TECHNIQUES.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
DBREF 1XV6 A 1 12 PDB 1XV6 1XV6 1 12
SEQRES 1 A 12 C2L G2L C2L G2L A2L A2L U2L U2L C2L G2L C2L G2L
MODRES 1XV6 C2L A 1 C
MODRES 1XV6 G2L A 2 G
MODRES 1XV6 C2L A 3 C
MODRES 1XV6 G2L A 4 G
MODRES 1XV6 A2L A 5 A
MODRES 1XV6 A2L A 6 A
MODRES 1XV6 U2L A 7 U
MODRES 1XV6 U2L A 8 U
MODRES 1XV6 C2L A 9 C
MODRES 1XV6 G2L A 10 G
MODRES 1XV6 C2L A 11 C
MODRES 1XV6 G2L A 12 G
HET C2L A 1 42
HET G2L A 2 44
HET C2L A 3 44
HET G2L A 4 44
HET A2L A 5 43
HET A2L A 6 43
HET U2L A 7 43
HET U2L A 8 43
HET C2L A 9 44
HET G2L A 10 44
HET C2L A 11 44
HET G2L A 12 45
HETNAM C2L 5-METHYL-3'-O-METHOXYETHYL CYTIDINE 5'-MONOPHOSPHATE
HETNAM G2L 3'-O-METHYOXYETHYL-GUANOSINE-5'-MONOPHOSPHATE
HETNAM A2L 3'-O-METHYOXYETHYL-ADENOSINE 5'-MONOPHOSPHATE
HETNAM U2L 5-METHYL-3'-O-METHOXYETHYL URIDINE-5'-MONOPHOSPHATE
FORMUL 1 C2L 4(C13 H22 N3 O9 P)
FORMUL 1 G2L 4(C13 H20 N5 O9 P)
FORMUL 1 A2L 2(C13 H20 N5 O8 P)
FORMUL 1 U2L 2(C13 H21 N2 O10 P)
LINK O2' C2L A 1 P G2L A 2 1555 1555 1.63
LINK O2' G2L A 2 P C2L A 3 1555 1555 1.60
LINK O2' C2L A 3 P G2L A 4 1555 1555 1.62
LINK O2' G2L A 4 P A2L A 5 1555 1555 1.63
LINK O2' A2L A 5 P A2L A 6 1555 1555 1.61
LINK O2' A2L A 6 P U2L A 7 1555 1555 1.62
LINK O2' U2L A 7 P U2L A 8 1555 1555 1.65
LINK O2' U2L A 8 P C2L A 9 1555 1555 1.62
LINK O2' C2L A 9 P G2L A 10 1555 1555 1.61
LINK O2' G2L A 10 P C2L A 11 1555 1555 1.61
LINK O2' C2L A 11 P G2L A 12 1555 1555 1.61
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes